Multi-study inference of regulatory networks for more accurate models of gene regulation

por Castro, Dayanne M., de Veaux, Nicholas R., Miraldi, Emily R., Bonneau, Richard
Publicado 2019

Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments

por Jackson, Christopher A, Castro, Dayanne M, Saldi, Giuseppe-Antonio, Bonneau, Richard, Gresham, David
Publicado 2020

Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells

por Miraldi, Emily R., Pokrovskii, Maria, Watters, Aaron, Castro, Dayanne M., De Veaux, Nicholas, Hall, Jason A., Lee, June-Yong, Ciofani, Maria, Madar, Aviv, Carriero, Nick, Littman, Dan R., Bonneau, Richard
Publicado 2019

High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0

por Skok Gibbs, Claudia, Jackson, Christopher A, Saldi, Giuseppe-Antonio, Tjärnberg, Andreas, Shah, Aashna, Watters, Aaron, De Veaux, Nicholas, Tchourine, Konstantine, Yi, Ren, Hamamsy, Tymor, Castro, Dayanne M, Carriero, Nicholas, Gorissen, Bram L, Gresham, David, Miraldi, Emily R, Bonneau, Richard
Publicado 2022