Tuning promoter boundaries improves regulatory motif discovery in nonmodel plants: the peach example

por Ksouri, Najla, Castro-Mondragón, Jaime A, Montardit-Tarda, Francesc, van Helden, Jacques, Contreras-Moreira, Bruno, Gogorcena, Yolanda
Publicado 2021

Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers

por Castro-Mondragon, Jaime A, Aure, Miriam Ragle, Lingjærde, Ole Christian, Langerød, Anita, Martens, John W M, Børresen-Dale, Anne-Lise, Kristensen, Vessela N, Mathelier, Anthony
Publicado 2022

Epromoters function as a hub to recruit key transcription factors required for the inflammatory response

por Santiago-Algarra, David, Souaid, Charbel, Singh, Himanshu, Dao, Lan T. M., Hussain, Saadat, Medina-Rivera, Alejandra, Ramirez-Navarro, Lucia, Castro-Mondragon, Jaime A., Sadouni, Nori, Charbonnier, Guillaume, Spicuglia, Salvatore
Publicado 2021

Crosstalk between microRNA expression and DNA methylation drives the hormone-dependent phenotype of breast cancer

por Aure, Miriam Ragle, Fleischer, Thomas, Bjørklund, Sunniva, Ankill, Jørgen, Castro-Mondragon, Jaime A., Børresen-Dale, Anne-Lise, Tost, Jörg, Sahlberg, Kristine K., Mathelier, Anthony, Tekpli, Xavier, Kristensen, Vessela N.
Publicado 2021

Genetic architecture of natural variation of cardiac performance from flies to humans

por Saha, Saswati, Spinelli, Lionel, Castro Mondragon, Jaime A, Kervadec, Anaïs, Lynott, Michaela, Kremmer, Laurent, Roder, Laurence, Krifa, Sallouha, Torres, Magali, Brun, Christine, Vogler, Georg, Bodmer, Rolf, Colas, Alexandre R, Ocorr, Karen, Perrin, Laurent
Publicado 2022

RSAT 2018: regulatory sequence analysis tools 20th anniversary

por Nguyen, Nga Thi Thuy, Contreras-Moreira, Bruno, Castro-Mondragon, Jaime A, Santana-Garcia, Walter, Ossio, Raul, Robles-Espinoza, Carla Daniela, Bahin, Mathieu, Collombet, Samuel, Vincens, Pierre, Thieffry, Denis, van Helden, Jacques, Medina-Rivera, Alejandra, Thomas-Chollier, Morgane
Publicado 2018

RSAT 2022: regulatory sequence analysis tools

por Santana-Garcia, Walter, Castro-Mondragon, Jaime A, Padilla-Gálvez, Mónica, Nguyen, Nga Thi Thuy, Elizondo-Salas, Ana, Ksouri, Najla, Gerbes, François, Thieffry, Denis, Vincens, Pierre, Contreras-Moreira, Bruno, van Helden, Jacques, Thomas-Chollier, Morgane, Medina-Rivera, Alejandra
Publicado 2022

RSAT 2015: Regulatory Sequence Analysis Tools

por Medina-Rivera, Alejandra, Defrance, Matthieu, Sand, Olivier, Herrmann, Carl, Castro-Mondragon, Jaime A., Delerce, Jeremy, Jaeger, Sébastien, Blanchet, Christophe, Vincens, Pierre, Caron, Christophe, Staines, Daniel M., Contreras-Moreira, Bruno, Artufel, Marie, Charbonnier-Khamvongsa, Lucie, Hernandez, Céline, Thieffry, Denis, Thomas-Chollier, Morgane, van Helden, Jacques
Publicado 2015

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

por Khan, Aziz, Fornes, Oriol, Stigliani, Arnaud, Gheorghe, Marius, Castro-Mondragon, Jaime A, van der Lee, Robin, Bessy, Adrien, Chèneby, Jeanne, Kulkarni, Shubhada R, Tan, Ge, Baranasic, Damir, Arenillas, David J, Sandelin, Albin, Vandepoele, Klaas, Lenhard, Boris, Ballester, Benoît, Wasserman, Wyeth W, Parcy, François, Mathelier, Anthony
Publicado 2018

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

por Khan, Aziz, Fornes, Oriol, Stigliani, Arnaud, Gheorghe, Marius, Castro-Mondragon, Jaime A, van der Lee, Robin, Bessy, Adrien, Chèneby, Jeanne, Kulkarni, Shubhada R, Tan, Ge, Baranasic, Damir, Arenillas, David J, Sandelin, Albin, Vandepoele, Klaas, Lenhard, Boris, Ballester, Benoît, Wasserman, Wyeth W, Parcy, François, Mathelier, Anthony
Publicado 2018

JASPAR 2020: update of the open-access database of transcription factor binding profiles

por Fornes, Oriol, Castro-Mondragon, Jaime A, Khan, Aziz, van der Lee, Robin, Zhang, Xi, Richmond, Phillip A, Modi, Bhavi P, Correard, Solenne, Gheorghe, Marius, Baranašić, Damir, Santana-Garcia, Walter, Tan, Ge, Chèneby, Jeanne, Ballester, Benoit, Parcy, François, Sandelin, Albin, Lenhard, Boris, Wasserman, Wyeth W, Mathelier, Anthony
Publicado 2020

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles

por Castro-Mondragon, Jaime A, Riudavets-Puig, Rafael, Rauluseviciute, Ieva, Berhanu Lemma, Roza, Turchi, Laura, Blanc-Mathieu, Romain, Lucas, Jeremy, Boddie, Paul, Khan, Aziz, Manosalva Pérez, Nicolás, Fornes, Oriol, Leung, Tiffany Y, Aguirre, Alejandro, Hammal, Fayrouz, Schmelter, Daniel, Baranasic, Damir, Ballester, Benoit, Sandelin, Albin, Lenhard, Boris, Vandepoele, Klaas, Wasserman, Wyeth W, Parcy, François, Mathelier, Anthony
Publicado 2021