The impact of storage buffer and storage conditions on fecal samples for bacteriophage infectivity and metavirome analyses

por Zhai, Xichuan, Castro-Mejía, Josué L., Gobbi, Alex, Aslampaloglou, Antonios, Kot, Witold, Nielsen, Dennis S., Deng, Ling
Publicado 2023

Post-weaning diarrhea in pigs from a single Danish production herd was not associated with the pre-weaning fecal microbiota composition and diversity

por Rydal, Martin Peter, Gambino, Michela, Castro-Mejia, Josue L., Poulsen, Louise Ladefoged, Jørgensen, Claus Bøttcher, Nielsen, Jens Peter
Publicado 2023

Complete Genome Sequences of Three Lactiplantibacillus plantarum Strains Isolated from Traditional Iranian Raw Milk Motal Cheese

por Fatemizadeh, Saeideh Sadat, Krych, Lukasz, Castro-Mejía, Josue L., Stefanova, Denitsa Vladimirova, Kot, Witold, Habibi Najafi, Mohammad Bagher, Nielsen, Dennis Sandris
Publicado 2022

A prebiotic intervention study in children with autism spectrum disorders (ASDs)

por Grimaldi, Roberta, Gibson, Glenn R., Vulevic, Jelena, Giallourou, Natasa, Castro-Mejía, Josué L., Hansen, Lars H., Leigh Gibson, E., Nielsen, Dennis S., Costabile, Adele
Publicado 2018

DNA enrichment and tagmentation method for species-level identification and strain-level differentiation using ON-rep-seq

por Krych, Łukasz, Castro-Mejía, Josué L., Forero-Junco, Laura M., Moesby, Daniel N., Mikkelsen, Morten B., Rasmussen, Morten A., Sykulski, Maciej, Nielsen, Dennis S.
Publicado 2019

Not simply a matter of parents—Infants’ sleep-wake patterns are associated with their regularity of eating

por Mühlematter, Christophe, Nielsen, Dennis S., Castro-Mejía, Josue L., Brown, Steven A., Rasch, Björn, Wright, Kenneth P., Walser, Jean-Claude, Schoch, Sarah F., Kurth, Salome
Publicado 2023

Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut

por Castro-Mejía, Josué L., Muhammed, Musemma K., Kot, Witold, Neve, Horst, Franz, Charles M. A. P., Hansen, Lars H., Vogensen, Finn K., Nielsen, Dennis S.
Publicado 2015

Mouse Vendor Influence on the Bacterial and Viral Gut Composition Exceeds the Effect of Diet

por Rasmussen, Torben Sølbeck, de Vries, Liv, Kot, Witold, Hansen, Lars Hestbjerg, Castro-Mejía, Josué L., Vogensen, Finn Kvist, Hansen, Axel Kornerup, Nielsen, Dennis Sandris
Publicado 2019

A Protocol for Extraction of Infective Viromes Suitable for Metagenomics Sequencing from Low Volume Fecal Samples

por Deng, Ling, Silins, Ronalds, Castro-Mejía, Josué L., Kot, Witold, Jessen, Leon, Thorsen, Jonathan, Shah, Shiraz, Stokholm, Jakob, Bisgaard, Hans, Moineau, Sylvain, Nielsen, Dennis Sandris
Publicado 2019

Impaired skeletal muscle hypertrophy signaling and amino acid deprivation response in Apoe knockout mice with an unhealthy lipoprotein distribution

por Agergaard, Jakob, Zillmer, Mie Cecilie Faber, Castro-Mejía, Josué L., Mertz, Kenneth, Kot, Witold, Højfeldt, Grith, van Hall, Gerrit, Nielsen, Dennis S., Schjerling, Peter, Holm, Lars
Publicado 2021

Human Fecal Metabolome Reflects Differences in Body Mass Index, Physical Fitness, and Blood Lipoproteins in Healthy Older Adults

por Cui, Mengni, Trimigno, Alessia, Castro-Mejía, Josue L., Reitelseder, Søren, Bülow, Jacob, Bechshøft, Rasmus Leidesdorff, Nielsen, Dennis Sandris, Holm, Lars, Engelsen, Søren Balling, Khakimov, Bekzod
Publicado 2021

Fecal filtrate transplantation protects against necrotizing enterocolitis

por Brunse, Anders, Deng, Ling, Pan, Xiaoyu, Hui, Yan, Castro-Mejía, Josué L., Kot, Witold, Nguyen, Duc Ninh, Secher, Jan Bojsen-Møller, Nielsen, Dennis Sandris, Thymann, Thomas
Publicado 2021

Controlling the uncontrolled variation in the diet induced obese mouse by microbiomic characterization

por Bondarenko, Valeriia, Løkke, Cecillie Reynolds, Dobrowolski, Peter, Mentzel, Caroline Junker, Castro-Mejía, Josué L., Hansen, Camilla Hartmann Friis, Sørensen, Dorte Bratbo, Nielsen, Dennis Sandris, Krych, Lukasz, Hansen, Axel Kornerup
Publicado 2022

Gut Microbiome and Its Cofactors Are Linked to Lipoprotein Distribution Profiles

por Castro-Mejía, Josué L., Khakimov, Bekzod, Aru, Violetta, Lind, Mads V., Garne, Eva, Paulová, Petronela, Tavakkoli, Elnaz, Hansen, Lars H., Smilde, Age K., Holm, Lars, Engelsen, Søren B., Nielsen, Dennis S.
Publicado 2022

Housing temperature influences exercise training adaptations in mice

por Raun, Steffen H., Henriquez-Olguín, Carlos, Karavaeva, Iuliia, Ali, Mona, Møller, Lisbeth L. V., Kot, Witold, Castro-Mejía, Josué L., Nielsen, Dennis Sandris, Gerhart-Hines, Zachary, Richter, Erik A., Sylow, Lykke
Publicado 2020

Restitution of gut microbiota in Ugandan children administered with probiotics (Lactobacillus rhamnosus GG and Bifidobacterium animalis subsp. lactis BB-12) during treatment for se...

por Castro-Mejía, Josué L., O’Ferrall, Sinéad, Krych, Łukasz, O’Mahony, Elaine, Namusoke, Hanifa, Lanyero, Betty, Kot, Witold, Nabukeera-Barungi, Nicolette, Michaelsen, Kim Fleischer, Mølgaard, Christian, Friis, Henrik, Grenov, Benedikte, Nielsen, Dennis S.
Publicado 2020

Dietary non-starch polysaccharides impair immunity to enteric nematode infection

por Valente, Angela H., Jensen, Karen M. R., Myhill, Laura J., Zhu, Ling, Mentzel, Caroline M. J., Krych, Lukasz, Simonsen, Henrik T., Castro-Mejía, Josue L., Gobbi, Alex, Bach Knudsen, Knud Erik, Nielsen, Dennis S., Thamsborg, Stig M., Williams, Andrew R.
Publicado 2023

Physical fitness in community‐dwelling older adults is linked to dietary intake, gut microbiota, and metabolomic signatures

por Castro‐Mejía, Josué L., Khakimov, Bekzod, Krych, Łukasz, Bülow, Jacob, Bechshøft, Rasmus L., Højfeldt, Grith, Mertz, Kenneth H., Garne, Eva Stahl, Schacht, Simon R., Ahmad, Hajar F., Kot, Witold, Hansen, Lars H., Perez‐Cueto, Federico J. A., Lind, Mads V., Lassen, Aske J., Tetens, Inge, Jensen, Tenna, Reitelseder, Søren, Jespersen, Astrid P., Holm, Lars, Engelsen, Søren B., Nielsen, Dennis S.
Publicado 2020

Expanding known viral diversity in the healthy infant gut

por Shah, Shiraz A., Deng, Ling, Thorsen, Jonathan, Pedersen, Anders G., Dion, Moïra B., Castro-Mejía, Josué L., Silins, Ronalds, Romme, Fie O., Sausset, Romain, Jessen, Leon E., Ndela, Eric Olo, Hjelmsø, Mathis, Rasmussen, Morten A., Redgwell, Tamsin A., Leal Rodríguez, Cristina, Vestergaard, Gisle, Zhang, Yichang, Chawes, Bo, Bønnelykke, Klaus, Sørensen, Søren J., Bisgaard, Hans, Enault, Francois, Stokholm, Jakob, Moineau, Sylvain, Petit, Marie-Agnès, Nielsen, Dennis S.
Publicado 2023