MTSplice predicts effects of genetic variants on tissue-specific splicing

por Cheng, Jun, Çelik, Muhammed Hasan, Kundaje, Anshul, Gagneur, Julien
Publicado 2021

Publisher Correction: MTSplice predicts effects of genetic variants on tissue-specific splicing

por Cheng, Jun, Çelik, Muhammed Hasan, Kundaje, Anshul, Gagneur, Julien
Publicado 2021

The Role of Diminishing Appetite and Serum Nesfatin-1 Level in Patients with Burn Wound Infection

por Albayrak, Ayse, Demiryilmaz, Ismail, Albayrak, Yavuz, Aylu, Belkiz, Ozogul, Bunyami, Cerrah, Serkan, Celik, Muhammed
Publicado 2013

MMSplice: modular modeling improves the predictions of genetic variant effects on splicing

por Cheng, Jun, Nguyen, Thi Yen Duong, Cygan, Kamil J., Çelik, Muhammed Hasan, Fairbrother, William G., Avsec, žiga, Gagneur, Julien
Publicado 2019

Detection of aberrant splicing events in RNA-seq data using FRASER

por Mertes, Christian, Scheller, Ines F., Yépez, Vicente A., Çelik, Muhammed H., Liang, Yingjiqiong, Kremer, Laura S., Gusic, Mirjana, Prokisch, Holger, Gagneur, Julien
Publicado 2021

Author Correction: Detection of aberrant splicing events in RNA-seq data using FRASER

por Mertes, Christian, Scheller, Ines F., Yépez, Vicente A., Çelik, Muhammed H., Liang, Yingjiqiong, Kremer, Laura S., Gusic, Mirjana, Prokisch, Holger, Gagneur, Julien
Publicado 2022

Neutrophil to lymphocyte ratio as a predictor of treatment response and mortality in septic shock patients in the intensive care unit

por SARI, Rabia, KARAKURT, Zuhal, AY, Mustafa, ÇELİK, Muhammed Emin, YALAZ TEKAN, Ülgen, ÇİYİLTEPE, Fulya, KARGIN, Feyza, SALTÜRK, Cüneyt, YAZICIOĞLU MOÇİN, Özlem, GÖKAY GÜNGÖR, ADIGÜZEL, Nalan
Publicado 2019

The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity

por Reese, Fairlie, Williams, Brian, Balderrama-Gutierrez, Gabriela, Wyman, Dana, Çelik, Muhammed Hasan, Rebboah, Elisabeth, Rezaie, Narges, Trout, Diane, Razavi-Mohseni, Milad, Jiang, Yunzhe, Borsari, Beatrice, Morabito, Samuel, Liang, Heidi Yahan, McGill, Cassandra J., Rahmanian, Sorena, Sakr, Jasmine, Jiang, Shan, Zeng, Weihua, Carvalho, Klebea, Weimer, Annika K., Dionne, Louise A., McShane, Ariel, Bedi, Karan, Elhajjajy, Shaimae I., Upchurch, Sean, Jou, Jennifer, Youngworth, Ingrid, Gabdank, Idan, Sud, Paul, Jolanki, Otto, Strattan, J. Seth, Kagda, Meenakshi S., Snyder, Michael P., Hitz, Ben C., Moore, Jill E., Weng, Zhiping, Bennett, David, Reinholdt, Laura, Ljungman, Mats, Beer, Michael A., Gerstein, Mark B., Pachter, Lior, Guigó, Roderic, Wold, Barbara J., Mortazavi, Ali
Publicado 2023

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

por Pardo-Palacios, Francisco J., Wang, Dingjie, Reese, Fairlie, Diekhans, Mark, Carbonell-Sala, Sílvia, Williams, Brian, Loveland, Jane E., De María, Maite, Adams, Matthew S., Balderrama-Gutierrez, Gabriela, Behera, Amit K., Gonzalez, Jose M., Hunt, Toby, Lagarde, Julien, Liang, Cindy E., Li, Haoran, Jerryd Meade, Marcus, Moraga Amador, David A., Prjibelski, Andrey D., Birol, Inanc, Bostan, Hamed, Brooks, Ashley M., Hasan Çelik, Muhammed, Chen, Ying, Du, Mei R,M., Felton, Colette, Göke, Jonathan, Hafezqorani, Saber, Herwig, Ralf, Kawaji, Hideya, Lee, Joseph, Liang Li, Jian, Lienhard, Matthias, Mikheenko, Alla, Mulligan, Dennis, Ming Nip, Ka, Pertea, Mihaela, Ritchie, Matthew E., Sim, Andre D., Tang, Alison D., Kei Wan, Yuk, Wang, Changqing, Wong, Brandon Y., Yang, Chen, Barnes, If, Berry, Andrew, Capella, Salvador, Dhillon, Namrita, Fernandez-Gonzalez, Jose M., Ferrández-Peral, Luis, Garcia-Reyero, Natàlia, Goetz, Stefan, Hernández-Ferrer, Carles, Kondratova, Liudmyla, Liu, Tianyuan, Martinez-Martin, Alessandra, Menor, Carlos, Mestre-Tomás, Jorge, Mudge, Jonathan M., Panayotova, Nedka G., Paniagua, Alejandro, Repchevsky, Dmitry, Rouchka, Eric, Saint-John, Brandon, Sapena, Enrique, Sheynkman, Leon, Laird Smith, Melissa, Suner, Marie-Marthe, Takahashi, Hazuki, Youngworth, Ingrid Ashley., Carninci, Piero, Denslow, Nancy D., Guigó, Roderic, Hunter, Margaret E., Tilgner, Hagen U., Wold, Barbara J., Vollmers, Christopher, Frankish, Adam, Fai Au, Kin, Sheynkman, Gloria M., Mortazavi, Ali, Conesa, Ana, Brooks, Angela N.
Publicado 2023