Recovery of metagenomic data from the Aedes aegypti microbiome using a reproducible snakemake pipeline: MINUUR

por Foo, Aidan, Cerdeira, Louise, Hughes, Grant L., Heinz, Eva
Publicado 2023

Genomic features of a clinical ESBL-producing and colistin-resistant hypermucoviscous K. quasipneumoniae subsp. similipneumoniae from Brazil

por Ferreira, Melina Lorraine, Araújo, Bruna Fuga, Cerdeira, Louise Teixeira, Toshio, César, Ribas, Rosineide Marques
Publicado 2019

MDR Escherichia coli carrying CTX-M-24 (IncF[F-:A1:B32]) and KPC-2 (IncX3/IncU) plasmids isolated from community-acquired urinary trainfection in Brazil

por Dias, Juliana Buck, Soncini, João Gabriel Material, Cerdeira, Louise, Lincopan, Nilton, Vespero, Eliana Carolina
Publicado 2022

Emergence of CTX-M-27-producing Escherichia coli of ST131 and clade C1-M27 in an impacted ecosystem with international maritime traffic in South America

por Fernandes, Miriam R, Sellera, Fábio P, Cunha, Marcos P V, Lopes, Ralf, Cerdeira, Louise, Lincopan, Nilton
Publicado 2020

Genomic data reveals the emergence of an IncQ1 small plasmid carrying bla(KPC-2) in Escherichia coli of the pandemic sequence type 648

por Fuga, Bruna, Cerdeira, Louise, Moura, Quézia, Fontana, Herrison, Fuentes-Castillo, Danny, Carvalho, Albalúcia C., Lincopan, Nilton
Publicado 2021

Wolbachia endosymbionts in two Anopheles species indicates independent acquisitions and lack of prophage elements

por Quek, Shannon, Cerdeira, Louise, Jeffries, Claire L., Tomlinson, Sean, Walker, Thomas, Hughes, Grant L., Heinz, Eva
Publicado 2022

Draft Genome Sequence of the First New Delhi Metallo-β-Lactamase (NDM-1)-Producing Escherichia coli Strain Isolated in Peru

por Tamariz, Jesus, Llanos, Carlos, Seas, Carlos, Montenegro, Paola, Lagos, Jose, Fernandes, Miriam R., Cerdeira, Louise, Lincopan, Nilton
Publicado 2018

Endophytic Lifestyle of Global Clones of Extended-Spectrum β-Lactamase-Producing Priority Pathogens in Fresh Vegetables: a Trojan Horse Strategy Favoring Human Colonization?

por Lopes, Ralf, Fuentes-Castillo, Danny, Fontana, Herrison, Rodrigues, Larissa, Dantas, Karine, Cerdeira, Louise, Henriques, Isabel, Lincopan, Nilton
Publicado 2021

A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex

por Lam, Margaret M. C., Wick, Ryan R., Watts, Stephen C., Cerdeira, Louise T., Wyres, Kelly L., Holt, Kathryn E.
Publicado 2021

A Scheduling Algorithm for Computational Grids that Minimizes Centralized Processing in Genome Assembly of Next-Generation Sequencing Data

por Lima, Jakelyne, Cerdeira, Louise Teixeira, Bol, Erick, Schneider, Maria Paula Cruz, Silva, Artur, Azevedo, Vasco, Abelém, Antônio Jorge Gomes
Publicado 2012

Zooanthroponotic Transmission of Drug-Resistant Pseudomonas aeruginosa, Brazil

por Fernandes, Miriam R., Sellera, Fábio P., Moura, Quézia, Carvalho, Marcelo P.N., Rosato, Paula N., Cerdeira, Louise, Lincopan, Nilton
Publicado 2018

Genomic Features of High-Priority Salmonella enterica Serovars Circulating in the Food Production Chain, Brazil, 2000–2016

por Monte, Daniel F., Lincopan, Nilton, Berman, Hanna, Cerdeira, Louise, Keelara, Shivaramu, Thakur, Siddhartha, Fedorka-Cray, Paula J., Landgraf, Mariza
Publicado 2019

Genomic insights of Klebsiella pneumoniae isolated from a native Amazonian fish reveal wide resistome against heavy metals, disinfectants, and clinically relevant antibiotics

por Cerdeira, Louise, Monte, Daniel F.M., Fuga, Bruna, Sellera, Fábio P., Neves, Ingrith, Rodrigues, Larissa, Landgraf, Mariza, Lincopan, Nilton
Publicado 2020

Trycycler: consensus long-read assemblies for bacterial genomes

por Wick, Ryan R., Judd, Louise M., Cerdeira, Louise T., Hawkey, Jane, Méric, Guillaume, Vezina, Ben, Wyres, Kelly L., Holt, Kathryn E.
Publicado 2021

Genome Sequences of Clinical Isolates of NDM-1-Producing Klebsiella quasipneumoniae subsp. similipneumoniae and KPC-2-Producing Klebsiella quasipneumoniae subsp. quasipneumoniae fr...

por Fuga, Bruna, Cerdeira, Louise, Andrade, Flávio, Zaccariotto, Tania, Esposito, Fernanda, Cardoso, Brenda, Rodrigues, Larissa, Neves, Ingrith, Levy, Carlos E., Lincopan, Nilton
Publicado 2020

Draft Genome Sequence of a Hospital-Associated Clone of Klebsiella pneumoniae ST340/CC258 Coproducing RmtG and KPC-2 Isolated from a Pediatric Patient

por Cerdeira, Louise, Fernandes, Miriam R., Francisco, Gabriela R., Bueno, Maria Fernanda C., Ienne, Susan, Souza, Tiago A., de Oliveira Garcia, Doroti, Lincopan, Nilton
Publicado 2016

Draft Genome Sequences of Colistin-Resistant MCR-1-Producing Escherichia coli ST1850 and ST74 Strains Isolated from Commercial Chicken Meat

por Monte, Daniel F., Fernandes, Miriam R., Cerdeira, Louise, de Souza, Tiago A., Mem, Andressa, Franco, Bernadette D. G. M., Landgraf, Mariza, Lincopan, Nilton
Publicado 2017

Linear plasmids in Klebsiella and other Enterobacteriaceae

por Hawkey, Jane, Cottingham, Hugh, Tokolyi, Alex, Wick, Ryan R., Judd, Louise M., Cerdeira, Louise, de Oliveira Garcia, Doroti, Wyres, Kelly L., Holt, Kathryn E.
Publicado 2022

Genomic Analysis of SXT/R391 Integrative Conjugative Elements From Proteus mirabilis Isolated in Brazil

por Sato, Juliana L., Fonseca, Marina R. B., Cerdeira, Louise T., Tognim, Maria C. B., Sincero, Thais C. M., Noronha do Amaral, Mario C., Lincopan, Nilton, Galhardo, Rodrigo S.
Publicado 2020

Draft Genome Sequence of a Pseudomonas aeruginosa Sequence Type 3351 Strain Exhibiting High-Level Resistance to Polymyxins in a Pediatric Patient with Cystic Fibrosis in Mexico

por Rosales-Reyes, Roberto, Esposito, Fernanda, Fuga, Bruna, Cerdeira, Louise, Gayosso-Vázquez, Catalina, Lezana-Fernández, José L., Lascurain, Ricardo, Valvano, Miguel A., Lincopan, Nilton, Santos-Preciado, José I.
Publicado 2020