New resources for functional analysis of omics data for the genus Aspergillus

por Nitsche, Benjamin M, Crabtree, Jonathan, Cerqueira, Gustavo C, Meyer, Vera, Ram, Arthur FJ, Wortman, Jennifer R
Publicado 2011

Transcript Expression Analysis of Putative Trypanosoma brucei GPI-Anchored Surface Proteins during Development in the Tsetse and Mammalian Hosts

por Savage, Amy F., Cerqueira, Gustavo C., Regmi, Sandesh, Wu, Yineng, El Sayed, Najib M., Aksoy, Serap
Publicado 2012

ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database

por Reis-Cunha, João L., Bartholomeu, Daniella C., Manson, Abigail L., Earl, Ashlee M., Cerqueira, Gustavo C.
Publicado 2019

Trypanosoma cruzi mitochondrial maxicircles display species- and strain-specific variation and a conserved element in the non-coding region

por Westenberger, Scott J, Cerqueira, Gustavo C, El-Sayed, Najib M, Zingales, Bianca, Campbell, David A, Sturm, Nancy R
Publicado 2006

Microarray analysis of gene expression induced by sexual contact in Schistosoma mansoni

por Waisberg, Michael, Lobo, Francisco P, Cerqueira, Gustavo C, Passos, Liana KJ, Carvalho, Omar S, Franco, Glória R, El-Sayed, Najib M
Publicado 2007

Genome-Wide Analysis Reveals Novel Genes Essential for Heme Homeostasis in Caenorhabditis elegans

por Severance, Scott, Rajagopal, Abbhirami, Rao, Anita U., Cerqueira, Gustavo C., Mitreva, Makedonka, El-Sayed, Najib M., Krause, Michael, Hamza, Iqbal
Publicado 2010

Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae

por Inglis, Diane O, Binkley, Jonathan, Skrzypek, Marek S, Arnaud, Martha B, Cerqueira, Gustavo C, Shah, Prachi, Wymore, Farrell, Wortman, Jennifer R, Sherlock, Gavin
Publicado 2013

Genomic organization and expression profile of the mucin-associated surface protein (masp) family of the human pathogen Trypanosoma cruzi

por Bartholomeu, Daniella C., Cerqueira, Gustavo C., Leão, Ana Carolina A., daRocha, Wanderson D., Pais, Fabiano S., Macedo, Camila, Djikeng, Appolinaire, Teixeira, Santuza M. R., El-Sayed, Najib M.
Publicado 2009

Identification of Schistosoma mansoni microRNAs

por Simões, Mariana C, Lee, Jonathan, Djikeng, Appolinaire, Cerqueira, Gustavo C, Zerlotini, Adhemar, da Silva-Pereira, Rosiane A, Dalby, Andrew R, LoVerde, Philip, El-Sayed, Najib M, Oliveira, Guilherme
Publicado 2011

Quantifying connectivity between local Plasmodium falciparum malaria parasite populations using identity by descent

por Taylor, Aimee R., Schaffner, Stephen F., Cerqueira, Gustavo C., Nkhoma, Standwell C., Anderson, Timothy J. C., Sriprawat, Kanlaya, Pyae Phyo, Aung, Nosten, François, Neafsey, Daniel E., Buckee, Caroline O.
Publicado 2017

Declines in prevalence alter the optimal level of sexual investment for the malaria parasite Plasmodium falciparum

por Early, Angela M., Camponovo, Flavia, Pelleau, Stéphane, Cerqueira, Gustavo C., Lazrek, Yassamine, Volney, Béatrice, Carrasquilla, Manuela, de Thoisy, Benoît, Buckee, Caroline O., Childs, Lauren M., Musset, Lise, Neafsey, Daniel E.
Publicado 2022

The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations

por Cerqueira, Gustavo C., Arnaud, Martha B., Inglis, Diane O., Skrzypek, Marek S., Binkley, Gail, Simison, Matt, Miyasato, Stuart R., Binkley, Jonathan, Orvis, Joshua, Shah, Prachi, Wymore, Farrell, Sherlock, Gavin, Wortman, Jennifer R.
Publicado 2014

The Genomic Diversification of the Whole Acinetobacter Genus: Origins, Mechanisms, and Consequences

por Touchon, Marie, Cury, Jean, Yoon, Eun-Jeong, Krizova, Lenka, Cerqueira, Gustavo C., Murphy, Cheryl, Feldgarden, Michael, Wortman, Jennifer, Clermont, Dominique, Lambert, Thierry, Grillot-Courvalin, Catherine, Nemec, Alexandr, Courvalin, Patrice, Rocha, Eduardo P.C.
Publicado 2014

Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance

por Cerqueira, Gustavo C., Cheeseman, Ian H., Schaffner, Steve F., Nair, Shalini, McDew-White, Marina, Phyo, Aung Pyae, Ashley, Elizabeth A., Melnikov, Alexandre, Rogov, Peter, Birren, Bruce W., Nosten, François, Anderson, Timothy J. C., Neafsey, Daniel E.
Publicado 2017

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

por Arnaud, Martha B., Cerqueira, Gustavo C., Inglis, Diane O., Skrzypek, Marek S., Binkley, Jonathan, Chibucos, Marcus C., Crabtree, Jonathan, Howarth, Clinton, Orvis, Joshua, Shah, Prachi, Wymore, Farrell, Binkley, Gail, Miyasato, Stuart R., Simison, Matt, Sherlock, Gavin, Wortman, Jennifer R.
Publicado 2012

Genomics of Loa loa, a Wolbachia-free filarial parasite of humans

por Desjardins, Christopher A., Cerqueira, Gustavo C., Goldberg, Jonathan M., Hotopp, Julie C. Dunning, Haas, Brian J., Zucker, Jeremy, Ribeiro, Jose’ M.C., Saif, Sakina, Levin, Joshua Z., Fan, Lin, Zeng, Qiandong, Russ, Carsten, Wortman, Jennifer R., Fink, Doran L., Birren, Bruce W., Nutman, Thomas B.
Publicado 2013

Simultaneous detection of genotype and phenotype enables rapid and accurate antibiotic susceptibility determination

por Bhattacharyya, Roby P., Bandyopadhyay, Nirmalya, Ma, Peijun, Son, Sophie S., Liu, Jamin, He, Lorrie L., Wu, Lidan, Khafizov, Rustem, Boykin, Rich, Cerqueira, Gustavo C., Pironti, Alejandro, Rudy, Robert F., Patel, Milesh M., Yang, Rui, Skerry, Jennifer, Nazarian, Elizabeth, Musser, Kimberly A., Taylor, Jill, Pierce, Virginia M., Earl, Ashlee M., Cosimi, Lisa A., Shoresh, Noam, Beechem, Joseph, Livny, Jonathan, Hung, Deborah T.
Publicado 2019

Automated next-generation profiling of genomic alterations in human cancers

por Keefer, Laurel A., White, James R., Wood, Derrick E., Gerding, Kelly M. R., Valkenburg, Kenneth C., Riley, David, Gault, Christopher, Papp, Eniko, Vollmer, Christine M., Greer, Amy, Hernandez, James, McGregor, Paul M., Zingone, Adriana, Ryan, Bríd M., Deak, Kristen, McCall, Shannon J., Datto, Michael B., Prescott, James L., Thompson, John F., Cerqueira, Gustavo C., Jones, Siân, Simmons, John K., McElhinny, Abigail, Dickey, Jennifer, Angiuoli, Samuel V., Diaz, Luis A., Velculescu, Victor E., Sausen, Mark
Publicado 2022

The genome of the blood fluke Schistosoma mansoni

por Berriman, Matthew, Haas, Brian J., LoVerde, Philip T., Wilson, R. Alan, Dillon, Gary P., Cerqueira, Gustavo C., Mashiyama, Susan T., Al-Lazikani, Bissan, Andrade, Luiza F., Ashton, Peter D., Aslett, Martin A., Bartholomeu, Daniella C., Blandin, Gaelle, Caffrey, Conor R., Coghlan, Avril, Coulson, Richard, Day, Tim A., Delcher, Art, DeMarco, Ricardo, Djikeng, Appoliniare, Eyre, Tina, Gamble, John A., Ghedin, Elodie, Gu, Yong, Hertz-Fowler, Christiane, Hirai, Hirohisha, Hirai, Yuriko, Houston, Robin, Ivens, Alasdair, Johnston, David A., Lacerda, Daniela, Macedo, Camila D., McVeigh, Paul, Ning, Zemin, Oliveira, Guilherme, Overington, John P., Parkhill, Julian, Pertea, Mihaela, Pierce, Raymond J., Protasio, Anna V., Quail, Michael A., Rajandream, Marie-Adèle, Rogers, Jane, Sajid, Mohammed, Salzberg, Steven L., Stanke, Mario, Tivey, Adrian R., White, Owen, Williams, David L., Wortman, Jennifer, Wu, Wenjie, Zamanian, Mostafa, Zerlotini, Adhemar, Fraser-Liggett, Claire M., Barrell, Barclay G., El-Sayed, Najib M.
Publicado 2009

The Genome of Anopheles darlingi, the main neotropical malaria vector

por Marinotti, Osvaldo, Cerqueira, Gustavo C., de Almeida, Luiz Gonzaga Paula, Ferro, Maria Inês Tiraboschi, Loreto, Elgion Lucio da Silva, Zaha, Arnaldo, Teixeira, Santuza M. R., Wespiser, Adam R., Almeida e Silva, Alexandre, Schlindwein, Aline Daiane, Pacheco, Ana Carolina Landim, da Silva, Artur Luiz da Costa, Graveley, Brenton R., Walenz, Brian P., Lima, Bruna de Araujo, Ribeiro, Carlos Alexandre Gomes, Nunes-Silva, Carlos Gustavo, de Carvalho, Carlos Roberto, Soares, Célia Maria de Almeida, de Menezes, Claudia Beatriz Afonso, Matiolli, Cleverson, Caffrey, Daniel, Araújo, Demetrius Antonio M., de Oliveira, Diana Magalhães, Golenbock, Douglas, Grisard, Edmundo Carlos, Fantinatti-Garboggini, Fabiana, de Carvalho, Fabíola Marques, Barcellos, Fernando Gomes, Prosdocimi, Francisco, May, Gemma, de Azevedo Junior, Gilson Martins, Guimarães, Giselle Moura, Goldman, Gustavo Henrique, Padilha, Itácio Q. M., Batista, Jacqueline da Silva, Ferro, Jesus Aparecido, Ribeiro, José M. C., Fietto, Juliana Lopes Rangel, Dabbas, Karina Maia, Cerdeira, Louise, Agnez-Lima, Lucymara Fassarella, Brocchi, Marcelo, de Carvalho, Marcos Oliveira, Teixeira, Marcus de Melo, Diniz Maia, Maria de Mascena, Goldman, Maria Helena S., Cruz Schneider, Maria Paula, Felipe, Maria Sueli Soares, Hungria, Mariangela, Nicolás, Marisa Fabiana, Pereira, Maristela, Montes, Martín Alejandro, Cantão, Maurício E., Vincentz, Michel, Rafael, Miriam Silva, Silverman, Neal, Stoco, Patrícia Hermes, Souza, Rangel Celso, Vicentini, Renato, Gazzinelli, Ricardo Tostes, Neves, Rogério de Oliveira, Silva, Rosane, Astolfi-Filho, Spartaco, Maciel, Talles Eduardo Ferreira, Ürményi, Turán P., Tadei, Wanderli Pedro, Camargo, Erney Plessmann, de Vasconcelos, Ana Tereza Ribeiro
Publicado 2013