clipplotr—a comparative visualization and analysis tool for CLIP data

por Chakrabarti, Anob M., Capitanchik, Charlotte, Ule, Jernej, Luscombe, Nicholas M.
Publicado 2023

nf-core/clipseq - a robust Nextflow pipeline for comprehensive CLIP data analysis

por West, Charlotte, Capitanchik, Charlotte, Cheshire, Chris, Luscombe, Nicholas M., Chakrabarti, Anob, Ule, Jernej
Publicado 2023

A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 3′ UTR structure to RNA metabolism

por Chakrabarti, Anob M, Iosub, Ira A, Lee, Flora C Y, Ule, Jernej, Luscombe, Nicholas M
Publicado 2023

Target-Specific Precision of CRISPR-Mediated Genome Editing

por Chakrabarti, Anob M., Henser-Brownhill, Tristan, Monserrat, Josep, Poetsch, Anna R., Luscombe, Nicholas M., Scaffidi, Paola
Publicado 2019

Reactive astrocytes in ALS display diminished intron retention

por Ziff, Oliver J, Taha, Doaa M, Crerar, Hamish, Clarke, Benjamin E, Chakrabarti, Anob M, Kelly, Gavin, Neeves, Jacob, Tyzack, Giulia E, Luscombe, Nicholas M, Patani, Rickie
Publicado 2021

Heteromeric RNP Assembly at LINEs Controls Lineage-Specific RNA Processing

por Attig, Jan, Agostini, Federico, Gooding, Clare, Chakrabarti, Anob M., Singh, Aarti, Haberman, Nejc, Zagalak, Julian A., Emmett, Warren, Smith, Christopher W.J., Luscombe, Nicholas M., Ule, Jernej
Publicado 2018

RGS4 RNA Secondary Structure Mediates Staufen2 RNP Assembly in Neurons

por Fernández-Moya, Sandra M., Ehses, Janina, Bauer, Karl E., Schieweck, Rico, Chakrabarti, Anob M., Lee, Flora C. Y., Illig, Christin, Luscombe, Nicholas M., Harner, Max, Ule, Jernej, Kiebler, Michael A.
Publicado 2021

Integrated transcriptome landscape of ALS identifies genome instability linked to TDP-43 pathology

por Ziff, Oliver J., Neeves, Jacob, Mitchell, Jamie, Tyzack, Giulia, Martinez-Ruiz, Carlos, Luisier, Raphaelle, Chakrabarti, Anob M., McGranahan, Nicholas, Litchfield, Kevin, Boulton, Simon J., Al-Chalabi, Ammar, Kelly, Gavin, Humphrey, Jack, Patani, Rickie
Publicado 2023

A systems view of spliceosomal assembly and branchpoints with iCLIP

por Briese, Michael, Haberman, Nejc, Sibley, Christopher R., Faraway, Rupert, Elser, Andrea S., Chakrabarti, Anob M., Wang, Zhen, König, Julian, Perera, David, Wickramasinghe, Vihandha O., Venkitaraman, Ashok R., Luscombe, Nicholas M., Saieva, Luciano, Pellizzoni, Livio, Smith, Christopher W.J., Curk, Tomaž, Ule, Jernej
Publicado 2019

TDP-43 condensation properties specify its RNA-binding and regulatory repertoire

por Hallegger, Martina, Chakrabarti, Anob M., Lee, Flora C.Y., Lee, Bo Lim, Amalietti, Aram G., Odeh, Hana M., Copley, Katie E., Rubien, Jack D., Portz, Bede, Kuret, Klara, Huppertz, Ina, Rau, Frédérique, Patani, Rickie, Fawzi, Nicolas L., Shorter, James, Luscombe, Nicholas M., Ule, Jernej
Publicado 2021