Mobile genetic elements in the bacterial phylum Acidobacteria

por Challacombe, Jean, Kuske, Cheryl
Publicado 2012

Mining locus tags in PubMed Central to improve microbial gene annotation

por Stubben, Chris J, Challacombe, Jean F
Publicado 2014

Shared features of cryptic plasmids from environmental and pathogenic Francisella species

por Challacombe, Jean F., Pillai, Segaran, Kuske, Cheryl R.
Publicado 2017

Genetic diversity within the genus Francisella as revealed by comparative analyses of the genomes of two North American isolates from environmental sources

por Siddaramappa, Shivakumara, Challacombe, Jean F, Petersen, Jeannine M, Pillai, Segaran, Kuske, Cheryl R
Publicado 2012

Biological Consequences of Ancient Gene Acquisition and Duplication in the Large Genome of Candidatus Solibacter usitatus Ellin6076

por Challacombe, Jean F., Eichorst, Stephanie A., Hauser, Loren, Land, Miriam, Xie, Gary, Kuske, Cheryl R.
Publicado 2011

Tomato Spotted Wilt Virus Benefits Its Thrips Vector by Modulating Metabolic and Plant Defense Pathways in Tomato

por Nachappa, Punya, Challacombe, Jean, Margolies, David C., Nechols, James R., Whitfield, Anna E., Rotenberg, Dorith
Publicado 2020

Interrogation of the Burkholderia pseudomallei Genome to Address Differential Virulence among Isolates

por Challacombe, Jean F., Stubben, Chris J., Klimko, Christopher P., Welkos, Susan L., Kern, Steven J., Bozue, Joel A., Worsham, Patricia L., Cote, Christopher K., Wolfe, Daniel N.
Publicado 2014

Genome Sequence of Bacillus anthracis STI, a Sterne-Like Georgian/Soviet Vaccine Strain

por Okinaka, Richard T., Challacombe, Jean, Drees, Kevin, Birdsell, Dawn N., Janke, Nicolette, Naumann, Amber, Seymour, Meagan, Hornstra, Heidie, Schupp, James, Sahl, Jason, Foster, Jeffrey T., Pearson, Talima, Turnbull, Peter, Keim, Paul
Publicado 2014

Genomes and secretomes of Ascomycota fungi reveal diverse functions in plant biomass decomposition and pathogenesis

por Challacombe, Jean F., Hesse, Cedar N., Bramer, Lisa M., McCue, Lee Ann, Lipton, Mary, Purvine, Samuel, Nicora, Carrie, Gallegos-Graves, La Verne, Porras-Alfaro, Andrea, Kuske, Cheryl R.
Publicado 2019

Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae

por Haley, Bradd J, Grim, Christopher J, Hasan, Nur A, Choi, Seon-Young, Chun, Jongsik, Brettin, Thomas S, Bruce, David C, Challacombe, Jean F, Detter, J Chris, Han, Cliff S, Huq, Anwar, Colwell, Rita R
Publicado 2010

A genomic perspective on the potential of Actinobacillus succinogenes for industrial succinate production

por McKinlay, James B, Laivenieks, Maris, Schindler, Bryan D, McKinlay, Anastasia A, Siddaramappa, Shivakumara, Challacombe, Jean F, Lowry, Stephen R, Clum, Alicia, Lapidus, Alla L, Burkhart, Kirk B, Harkins, Victoria, Vieille, Claire
Publicado 2010

An attenuated strain of Bacillus anthracis (CDC 684) has a large chromosomal inversion and altered growth kinetics

por Okinaka, Richard T, Price, Erin P, Wolken, Spenser R, Gruendike, Jeffrey M, Chung, Wai Kwan, Pearson, Talima, Xie, Gary, Munk, Chris, Hill, Karen K, Challacombe, Jean, Ivins, Bruce E, Schupp, James M, Beckstrom-Sternberg, Stephen M, Friedlander, Arthur, Keim, Paul
Publicado 2011

Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses

por Siddaramappa, Shivakumara, Challacombe, Jean F, Duncan, Alison J, Gillaspy, Allison F, Carson, Matthew, Gipson, Jenny, Orvis, Joshua, Zaitshik, Jeremy, Barnes, Gentry, Bruce, David, Chertkov, Olga, Detter, J Chris, Han, Cliff S, Tapia, Roxanne, Thompson, Linda S, Dyer, David W, Inzana, Thomas J
Publicado 2011

A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099(T)

por Siddaramappa, Shivakumara, Challacombe, Jean F, DeCastro, Rosana E, Pfeiffer, Friedhelm, Sastre, Diego E, Giménez, María I, Paggi, Roberto A, Detter, John C, Davenport, Karen W, Goodwin, Lynne A, Kyrpides, Nikos, Tapia, Roxanne, Pitluck, Samuel, Lucas, Susan, Woyke, Tanja, Maupin-Furlow, Julie A
Publicado 2012

Perspective on Improving Environmental Monitoring of Biothreats

por Dunbar, John, Pillai, Segaran, Wunschel, David, Dickens, Michael, Morse, Stephen A., Franz, David, Bartko, Andrew, Challacombe, Jean, Persons, Timothy, Hughes, Molly A., Blanke, Steve R., Holland, Robin, Hutchison, Janine, Merkley, Eric D., Campbell, Katrina, Branda, Catherine S., Sharma, Shashi, Lindler, Luther, Anderson, Kevin, Hodge, David
Publicado 2018

Complete genome sequence of Halorhodospira halophila SL1

por Challacombe, Jean F., Majid, Sophia, Deole, Ratnakar, Brettin, Thomas S., Bruce, David, Delano, Susana F., Detter, John C., Gleasner, Cheryl D., Han, Cliff S., Misra, Monica, Reitenga, Krista G., Mikhailova, Natalia, Woyke, Tanja, Pitluck, Sam, Nolan, Matt, Land, Miriam L., Saunders, Elizabeth, Tapia, Roxanne, Lapidus, Alla, Ivanova, Natalia, Hoff, Wouter D.
Publicado 2013

Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains

por Siddaramappa, Shivakumara, Challacombe, Jean F., Delano, Susana F., Green, Lance D., Daligault, Hajnalka, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Shunsheng, Goodwin, Lynne, Han, James, Woyke, Tanja, Pitluck, Sam, Pennacchio, Len, Nolan, Matt, Land, Miriam, Chang, Yun-Juan, Kyrpides, Nikos C., Ovchinnikova, Galina, Hauser, Loren, Lapidus, Alla, Yan, Jun, Bowman, Kimberly S., da Costa, Milton S., Rainey, Fred A., Moe, William M.
Publicado 2012

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

por Kubicek, Christian P, Herrera-Estrella, Alfredo, Seidl-Seiboth, Verena, Martinez, Diego A, Druzhinina, Irina S, Thon, Michael, Zeilinger, Susanne, Casas-Flores, Sergio, Horwitz, Benjamin A, Mukherjee, Prasun K, Mukherjee, Mala, Kredics, László, Alcaraz, Luis D, Aerts, Andrea, Antal, Zsuzsanna, Atanasova, Lea, Cervantes-Badillo, Mayte G, Challacombe, Jean, Chertkov, Olga, McCluskey, Kevin, Coulpier, Fanny, Deshpande, Nandan, von Döhren, Hans, Ebbole, Daniel J, Esquivel-Naranjo, Edgardo U, Fekete, Erzsébet, Flipphi, Michel, Glaser, Fabian, Gómez-Rodríguez, Elida Y, Gruber, Sabine, Han, Cliff, Henrissat, Bernard, Hermosa, Rosa, Hernández-Oñate, Miguel, Karaffa, Levente, Kosti, Idit, Le Crom, Stéphane, Lindquist, Erika, Lucas, Susan, Lübeck, Mette, Lübeck, Peter S, Margeot, Antoine, Metz, Benjamin, Misra, Monica, Nevalainen, Helena, Omann, Markus, Packer, Nicolle, Perrone, Giancarlo, Uresti-Rivera, Edith E, Salamov, Asaf, Schmoll, Monika, Seiboth, Bernhard, Shapiro, Harris, Sukno, Serenella, Tamayo-Ramos, Juan Antonio, Tisch, Doris, Wiest, Aric, Wilkinson, Heather H, Zhang, Michael, Coutinho, Pedro M, Kenerley, Charles M, Monte, Enrique, Baker, Scott E, Grigoriev, Igor V
Publicado 2011