CONSERVED GENOMIC TERMINALS OF SARS-COV-2 AS CO-EVOLVING FUNCTIONAL ELEMENTS AND POTENTIAL THERAPEUTIC TARGETS

por Chan, Agnes. P., Choi, Yongwook, Schork, Nicholas J.
Publicado 2020

Conserved Genomic Terminals of SARS-CoV-2 as Coevolving Functional Elements and Potential Therapeutic Targets

por Chan, Agnes P., Choi, Yongwook, Schork, Nicholas J.
Publicado 2020

Comparison of phasing strategies for whole human genomes

por Choi, Yongwook, Chan, Agnes P., Kirkness, Ewen, Telenti, Amalio, Schork, Nicholas J.
Publicado 2018

Predicting the Functional Effect of Amino Acid Substitutions and Indels

por Choi, Yongwook, Sims, Gregory E., Murphy, Sean, Miller, Jason R., Chan, Agnes P.
Publicado 2012

Nonadditive gene expression is correlated with nonadditive phenotypic expression in interspecific triploid hybrids of willow (Salix spp.)

por Carlson, Craig H, Choi, Yongwook, Chan, Agnes P, Town, Christopher D, Smart, Lawrence B
Publicado 2021

Dominance and Sexual Dimorphism Pervade the Salix purpurea L. Transcriptome

por Carlson, Craig H., Choi, Yongwook, Chan, Agnes P., Serapiglia, Michelle J., Town, Christopher D., Smart, Lawrence B.
Publicado 2017

Single nucleotide polymorphisms for assessing genetic diversity in castor bean (Ricinus communis)

por Foster, Jeffrey T, Allan, Gerard J, Chan, Agnes P, Rabinowicz, Pablo D, Ravel, Jacques, Jackson, Paul J, Keim, Paul
Publicado 2010

The highest-copy repeats are methylated in the small genome of the early divergent vascular plant Selaginella moellendorffii

por Chan, Agnes P, Melake-Berhan, Admasu, O'Brien, Kimberly, Buckley, Stephanie, Quan, Hui, Chen, Dan, Lewis, Matthew, Banks, Jo Ann, Rabinowicz, Pablo D
Publicado 2008

Multidrug resistant pathogens respond differently to the presence of co-pathogen, commensal, probiotic and host cells

por Chan, Agnes P., Choi, Yongwook, Brinkac, Lauren M., Krishnakumar, Radha, DePew, Jessica, Kim, Maria, Hinkle, Mary K., Lesho, Emil P., Fouts, Derrick E.
Publicado 2018

Rapid Replacement of Acinetobacter baumannii Strains Accompanied by Changes in Lipooligosaccharide Loci and Resistance Gene Repertoire

por Adams, Mark D., Wright, Meredith S., Karichu, James K., Venepally, Pratap, Fouts, Derrick E., Chan, Agnes P., Richter, Sandra S., Jacobs, Michael R., Bonomo, Robert A.
Publicado 2019

The TIGR Plant Transcript Assemblies database

por Childs, Kevin L., Hamilton, John P., Zhu, Wei, Ly, Eugene, Cheung, Foo, Wu, Hank, Rabinowicz, Pablo D., Town, Chris D., Buell, C. Robin, Chan, Agnes P.
Publicado 2007

AbGRI4, a novel antibiotic resistance island in multiply antibiotic-resistant Acinetobacter baumannii clinical isolates

por Chan, Agnes P, Choi, Yongwook, Clarke, Thomas H, Brinkac, Lauren M, White, Richard C, Jacobs, Michael R, Bonomo, Robert A, Adams, Mark D, Fouts, Derrick E
Publicado 2020

Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release

por Haas, Brian J, Wortman, Jennifer R, Ronning, Catherine M, Hannick, Linda I, Smith, Roger K, Maiti, Rama, Chan, Agnes P, Yu, Chunhui, Farzad, Maryam, Wu, Dongying, White, Owen, Town, Christopher D
Publicado 2005

The TIGR Maize Database

por Chan, Agnes P., Pertea, Geo, Cheung, Foo, Lee, Dan, Zheng, Li, Whitelaw, Cathy, Pontaroli, Ana C., SanMiguel, Phillip, Yuan, Yinan, Bennetzen, Jeffrey, Barbazuk, William Brad, Quackenbush, John, Rabinowicz, Pablo D.
Publicado 2006

A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii

por Chan, Agnes P., Sutton, Granger, DePew, Jessica, Krishnakumar, Radha, Choi, Yongwook, Huang, Xiao-Zhe, Beck, Erin, Harkins, Derek M., Kim, Maria, Lesho, Emil P., Nikolich, Mikeljon P., Fouts, Derrick E.
Publicado 2015

Mechanism-of-Action Classification of Antibiotics by Global Transcriptome Profiling

por O’Rourke, Aubrie, Beyhan, Sinem, Choi, Yongwook, Morales, Pavel, Chan, Agnes P., Espinoza, Josh L., Dupont, Chris L., Meyer, Kirsten J., Spoering, Amy, Lewis, Kim, Nierman, William C., Nelson, Karen E.
Publicado 2020

Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach

por Espinoza, Josh L., Dupont, Chris L., O’Rourke, Aubrie, Beyhan, Sinem, Morales, Pavel, Spoering, Amy, Meyer, Kirsten J., Chan, Agnes P., Choi, Yongwook, Nierman, William C., Lewis, Kim, Nelson, Karen E.
Publicado 2021

Borrelia PeptideAtlas: A proteome resource of common Borrelia burgdorferi isolates for Lyme research

por Reddy, Panga Jaipal., Sun, Zhi, Wippel, Helisa H., Baxter, David, Swearingen, Kristian, Shteynberg, David D., Midha, Mukul K., Caimano, Melissa J., Strle, Klemen, Choi, Yongwook, Chan, Agnes P., Schork, Nicholas J., Moritz, Robert L.
Publicado 2023

Insular Organization of Gene Space in Grass Genomes

por Gottlieb, Andrea, Müller, Hans-Georg, Massa, Alicia N., Wanjugi, Humphrey, Deal, Karin R., You, Frank M., Xu, Xiangyang, Gu, Yong Q., Luo, Ming-Cheng, Anderson, Olin D., Chan, Agnes P., Rabinowicz, Pablo, Devos, Katrien M., Dvorak, Jan
Publicado 2013

Castor Bean Organelle Genome Sequencing and Worldwide Genetic Diversity Analysis

por Rivarola, Maximo, Foster, Jeffrey T., Chan, Agnes P., Williams, Amber L., Rice, Danny W., Liu, Xinyue, Melake-Berhan, Admasu, Huot Creasy, Heather, Puiu, Daniela, Rosovitz, M. J., Khouri, Hoda M., Beckstrom-Sternberg, Stephen M., Allan, Gerard J., Keim, Paul, Ravel, Jacques, Rabinowicz, Pablo D.
Publicado 2011