Accurate reconstruction of bacterial pan- and core genomes with PEPPAN

por Zhou, Zhemin, Charlesworth, Jane, Achtman, Mark
Publicado 2020

HierCC: a multi-level clustering scheme for population assignments based on core genome MLST

por Zhou, Zhemin, Charlesworth, Jane, Achtman, Mark
Publicado 2021

MicroRNA expression profiles in avian haemopoietic cells

por Yao, Yongxiu, Charlesworth, Jane, Nair, Venugopal, Watson, Mick
Publicado 2013

EnteroBase: hierarchical clustering of 100 000s of bacterial genomes into species/subspecies and populations

por Achtman, Mark, Zhou, Zhemin, Charlesworth, Jane, Baxter, Laura
Publicado 2022

Where next for the reproducibility agenda in computational biology?

por Lewis, Joanna, Breeze, Charles E., Charlesworth, Jane, Maclaren, Oliver J., Cooper, Jonathan
Publicado 2016

Genome Reduction Is Associated with Bacterial Pathogenicity across Different Scales of Temporal and Ecological Divergence

por Murray, Gemma G R, Charlesworth, Jane, Miller, Eric L, Casey, Michael J, Lloyd, Catrin T, Gottschalk, Marcelo, Tucker, Alexander W (Dan), Welch, John J, Weinert, Lucy A
Publicado 2020

Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus

por Everitt, Richard G., Didelot, Xavier, Batty, Elizabeth M., Miller, Ruth R, Knox, Kyle, Young, Bernadette C., Bowden, Rory, Auton, Adam, Votintseva, Antonina, Larner-Svensson, Hanna, Charlesworth, Jane, Golubchik, Tanya, Ip, Camilla L. C., Godwin, Heather, Fung, Rowena, Peto, Tim E. A., Walker, A. Sarah, Crook, Derrick W., Wilson, Daniel J.
Publicado 2014

Severe infections emerge from commensal bacteria by adaptive evolution

por Young, Bernadette C, Wu, Chieh-Hsi, Gordon, N Claire, Cole, Kevin, Price, James R, Liu, Elian, Sheppard, Anna E, Perera, Sanuki, Charlesworth, Jane, Golubchik, Tanya, Iqbal, Zamin, Bowden, Rory, Massey, Ruth C, Paul, John, Crook, Derrick W, Peto, Timothy E, Walker, A Sarah, Llewelyn, Martin J, Wyllie, David H, Wilson, Daniel J
Publicado 2017

Antimicrobial resistance determinants are associated with Staphylococcus aureus bacteraemia and adaptation to the healthcare environment: a bacterial genome-wide association study

por Young, Bernadette C., Wu, Chieh-Hsi, Charlesworth, Jane, Earle, Sarah, Price, James R., Gordon, N. Claire, Cole, Kevin, Dunn, Laura, Liu, Elian, Oakley, Sarah, Godwin, Heather, Fung, Rowena, Miller, Ruth, Knox, Kyle, Votintseva, Antonina, Quan, T. Phuong, Tilley, Robert, Scarborough, Matthew, Crook, Derrick W., Peto, Timothy E., Walker, A. Sarah, Llewelyn, Martin J., Wilson, Daniel J.
Publicado 2021