High-resolution characterization of short-term temporal variability in the taxonomic and resistome composition of wastewater influent

por Chau, Kevin K., Goodall, T., Bowes, M., Easterbrook, K., Brett, H., Hughes, J., Crook, D.W., Read, D.S., Walker, A.S., Stoesser, N.
Publicado 2023

Full-length isoform transcriptome of the developing human brain provides further insights into autism

por Chau, Kevin K., Zhang, Pan, Urresti, Jorge, Amar, Megha, Pramod, Akula Bala, Chen, Jiaye, Thomas, Amy, Corominas, Roser, Lin, Guan Ning, Iakoucheva, Lilia M.
Publicado 2021

A longitudinal study reveals persistence of antimicrobial resistance on livestock farms is not due to antimicrobial usage alone

por Smith, Richard P., May, Hannah E., AbuOun, Manal, Stubberfield, Emma, Gilson, Daniel, Chau, Kevin K., Crook, Derrick W., Shaw, Liam P., Read, Daniel S., Stoesser, Nicole, Vilar, Maria Jose, Anjum, Muna F.
Publicado 2023

Optimized use of Oxford Nanopore flowcells for hybrid assemblies

por Lipworth, Samuel, Pickford, Hayleah, Sanderson, Nicholas, Chau, Kevin K., Kavanagh, James, Barker, Leanne, Vaughan, Alison, Swann, Jeremy, Andersson, Monique, Jeffery, Katie, Morgan, Marcus, Peto, Timothy E. A., Crook, Derrick W., Stoesser, Nicole, Walker, A. Sarah
Publicado 2020

Ten Years of Population-Level Genomic Escherichia coli and Klebsiella pneumoniae Serotype Surveillance Informs Vaccine Development for Invasive Infections

por Lipworth, Samuel, Vihta, Karina-Doris, Chau, Kevin K, Kavanagh, James, Davies, Timothy, George, Sophie, Barker, Leanne, Vaughan, Ali, Andersson, Monique, Jeffery, Katie, Oakley, Sarah, Morgan, Marcus, Peto, Timothy E A, Crook, Derrick W, Walker, A Sarah, Stoesser, Nicole
Publicado 2021

Reclassification of the Etiology of Infant Mortality With Whole-Genome Sequencing

por Owen, Mallory J., Wright, Meredith S., Batalov, Sergey, Kwon, Yonghyun, Ding, Yan, Chau, Kevin K., Chowdhury, Shimul, Sweeney, Nathaly M., Kiernan, Elizabeth, Richardson, Andrew, Batton, Emily, Baer, Rebecca J., Bandoli, Gretchen, Gleeson, Joseph G., Bainbridge, Matthew, Chambers, Christina D., Kingsmore, Stephen F.
Publicado 2023

A genomic epidemiological study shows that prevalence of antimicrobial resistance in Enterobacterales is associated with the livestock host, as well as antimicrobial usage

por AbuOun, Manal, Jones, Hannah, Stubberfield, Emma, Gilson, Daniel, Shaw, Liam P., Hubbard, Alasdair T. M., Chau, Kevin K., Sebra, Robert, Peto, Tim E. A., Crook, Derrick W., Read, Daniel S., Gweon, H. Soon, Walker, A. Sarah, Stoesser, Nicole, Smith, Richard P., Anjum, Muna F.
Publicado 2021

Genomic surveillance of Escherichia coli and Klebsiella spp. in hospital sink drains and patients

por Constantinides, Bede, Chau, Kevin K., Quan, T. Phuong, Rodger, Gillian, Andersson, Monique I., Jeffery, Katie, Lipworth, Sam, Gweon, Hyun S., Peniket, Andy, Pike, Graham, Millo, Julian, Byukusenge, Mary, Holdaway, Matt, Gibbons, Cat, Mathers, Amy J., Crook, Derrick W., Peto, Timothy E.A., Walker, A. Sarah, Stoesser, Nicole
Publicado 2020

Epidemiological data and genome sequencing reveals that nosocomial transmission of SARS-CoV-2 is underestimated and mostly mediated by a small number of highly infectious individua...

por Lumley, Sheila F, Constantinides, Bede, Sanderson, Nicholas, Rodger, Gillian, Street, Teresa L, Swann, Jeremy, Chau, Kevin K, O'Donnell, Denise, Warren, Fiona, Hoosdally, Sarah, O'Donnell, Anne-Marie, Walker, Timothy M, Stoesser, Nicole E, Butcher, Lisa, Peto, Tim EA, Crook, Derrick W, Jeffery, Katie, Matthews, Philippa C, Eyre, David W
Publicado 2021

Genomic network analysis of environmental and livestock F-type plasmid populations

por Matlock, William, Chau, Kevin K., AbuOun, Manal, Stubberfield, Emma, Barker, Leanne, Kavanagh, James, Pickford, Hayleah, Gilson, Daniel, Smith, Richard P., Gweon, H. Soon, Hoosdally, Sarah J., Swann, Jeremy, Sebra, Robert, Bailey, Mark J., Peto, Timothy E. A., Crook, Derrick W., Anjum, Muna F., Read, Daniel S., Walker, A. Sarah, Stoesser, Nicole, Shaw, Liam P.
Publicado 2021

Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae

por Shaw, Liam P., Chau, Kevin K., Kavanagh, James, AbuOun, Manal, Stubberfield, Emma, Gweon, H. Soon, Barker, Leanne, Rodger, Gillian, Bowes, Mike J., Hubbard, Alasdair T. M., Pickford, Hayleah, Swann, Jeremy, Gilson, Daniel, Smith, Richard P., Hoosdally, Sarah J., Sebra, Robert, Brett, Howard, Peto, Tim E. A., Bailey, Mark J., Crook, Derrick W., Read, Daniel S., Anjum, Muna F., Walker, A. Sarah, Stoesser, Nicole
Publicado 2021

SARS-CoV-2 antibody prevalence, titres and neutralising activity in an antenatal cohort, United Kingdom, 14 April to 15 June 2020

por Lumley, Sheila F, Eyre, David W, McNaughton, Anna L, Howarth, Alison, Hoosdally, Sarah, Hatch, Stephanie B, Kavanagh, James, Chau, Kevin K, Downs, Louise O, Cox, Stuart, Dunn, Laura, Justice, Anita, Wareing, Susan, Dingle, Kate, Rudkin, Justine, Auckland, Kathryn, Fyfe, Alexander, Bolton, Jai, Paton, Robert, Mentzer, Alexander J, Jeffery, Katie, Andersson, Monique I, James, Tim, Peto, Tim E A, Marsden, Brian D, Screaton, Gavin, Cornall, Richard J, Klenerman, Paul, Ebner, Daniel, Stuart, David I, Crook, Derrick W, Stoesser, Nicole, Kennedy, Stephen H, Thompson, Craig, Gupta, Sunetra, Matthews, Philippa C
Publicado 2020

Constructing custom-made radiotranscriptomic signatures of vascular inflammation from routine CT angiograms: a prospective outcomes validation study in COVID-19

por Kotanidis, Christos P, Xie, Cheng, Alexander, Donna, Rodrigues, Jonathan C L, Burnham, Katie, Mentzer, Alexander, O’Connor, Daniel, Knight, Julian, Siddique, Muhammad, Lockstone, Helen, Thomas, Sheena, Kotronias, Rafail, Oikonomou, Evangelos K, Badi, Ileana, Lyasheva, Maria, Shirodaria, Cheerag, Lumley, Sheila F, Constantinides, Bede, Sanderson, Nicholas, Rodger, Gillian, Chau, Kevin K, Lodge, Archie, Tsakok, Maria, Gleeson, Fergus, Adlam, David, Rao, Praveen, Indrajeet, Das, Deshpande, Aparna, Bajaj, Amrita, Hudson, Benjamin J, Srivastava, Vivek, Farid, Shakil, Krasopoulos, George, Sayeed, Rana, Ho, Ling-Pei, Neubauer, Stefan, Newby, David E, Channon, Keith M, Deanfield, John, Antoniades, Charalambos
Publicado 2022

An Observational Cohort Study on the Incidence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection and B.1.1.7 Variant Infection in Healthcare Workers by Anti...

por Lumley, Sheila F, Rodger, Gillian, Constantinides, Bede, Sanderson, Nicholas, Chau, Kevin K, Street, Teresa L, O’Donnell, Denise, Howarth, Alison, Hatch, Stephanie B, Marsden, Brian D, Cox, Stuart, James, Tim, Warren, Fiona, Peck, Liam J, Ritter, Thomas G, de Toledo, Zoe, Warren, Laura, Axten, David, Cornall, Richard J, Jones, E Yvonne, Stuart, David I, Screaton, Gavin, Ebner, Daniel, Hoosdally, Sarah, Chand, Meera, Crook, Derrick W, O’Donnell, Anne-Marie, Conlon, Christopher P, Pouwels, Koen B, Walker, A Sarah, Peto, Tim E A, Hopkins, Susan, Walker, Timothy M, Stoesser, Nicole E, Matthews, Philippa C, Jeffery, Katie, Eyre, David W
Publicado 2021

Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study

por Eyre, David W, Lumley, Sheila F, O'Donnell, Denise, Campbell, Mark, Sims, Elizabeth, Lawson, Elaine, Warren, Fiona, James, Tim, Cox, Stuart, Howarth, Alison, Doherty, George, Hatch, Stephanie B, Kavanagh, James, Chau, Kevin K, Fowler, Philip W, Swann, Jeremy, Volk, Denis, Yang-Turner, Fan, Stoesser, Nicole, Matthews, Philippa C, Dudareva, Maria, Davies, Timothy, Shaw, Robert H, Peto, Leon, Downs, Louise O, Vogt, Alexander, Amini, Ali, Young, Bernadette C, Drennan, Philip George, Mentzer, Alexander J, Skelly, Donal T, Karpe, Fredrik, Neville, Matt J, Andersson, Monique, Brent, Andrew J, Jones, Nicola, Martins Ferreira, Lucas, Christott, Thomas, Marsden, Brian D, Hoosdally, Sarah, Cornall, Richard, Crook, Derrick W, Stuart, David I, Screaton, Gavin, Peto, Timothy EA, Holthof, Bruno, O'Donnell, Anne-Marie, Ebner, Daniel, Conlon, Christopher P, Jeffery, Katie, Walker, Timothy M
Publicado 2020

An automated 13.5 hour system for scalable diagnosis and acute management guidance for genetic diseases

por Owen, Mallory J., Lefebvre, Sebastien, Hansen, Christian, Kunard, Chris M., Dimmock, David P., Smith, Laurie D., Scharer, Gunter, Mardach, Rebecca, Willis, Mary J., Feigenbaum, Annette, Niemi, Anna-Kaisa, Ding, Yan, Van Der Kraan, Luca, Ellsworth, Katarzyna, Guidugli, Lucia, Lajoie, Bryan R., McPhail, Timothy K., Mehtalia, Shyamal S., Chau, Kevin K., Kwon, Yong H., Zhu, Zhanyang, Batalov, Sergey, Chowdhury, Shimul, Rego, Seema, Perry, James, Speziale, Mark, Nespeca, Mark, Wright, Meredith S., Reese, Martin G., De La Vega, Francisco M., Azure, Joe, Frise, Erwin, Rigby, Charlene Son, White, Sandy, Hobbs, Charlotte A., Gilmer, Sheldon, Knight, Gail, Oriol, Albert, Lenberg, Jerica, Nahas, Shareef A., Perofsky, Kate, Kim, Kyu, Carroll, Jeanne, Coufal, Nicole G., Sanford, Erica, Wigby, Kristen, Weir, Jacqueline, Thomson, Vicki S., Fraser, Louise, Lazare, Seka S., Shin, Yoon H., Grunenwald, Haiying, Lee, Richard, Jones, David, Tran, Duke, Gross, Andrew, Daigle, Patrick, Case, Anne, Lue, Marisa, Richardson, James A., Reynders, John, Defay, Thomas, Hall, Kevin P., Veeraraghavan, Narayanan, Kingsmore, Stephen F.
Publicado 2022