A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes

por Chauve, Cedric, Tannier, Eric
Publicado 2008

Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes

por Wittler, Roland, Chauve, Cedric
Publicado 2011

Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes

por Luhmann, Nina, Doerr, Daniel, Chauve, Cedric
Publicado 2017

Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models

por Chauve, Cedric, Ponty, Yann, Wallner, Michael
Publicado 2020

Genion, an accurate tool to detect gene fusion from long transcriptomics reads

por Karaoglanoglu, Fatih, Chauve, Cedric, Hach, Faraz
Publicado 2022

Mapping ancestral genomes with massive gene loss: A matrix sandwich problem

por Gavranović, Haris, Chauve, Cedric, Salse, Jérôme, Tannier, Eric
Publicado 2011

Evolution of genes neighborhood within reconciled phylogenies: an ensemble approach

por Chauve, Cedric, Ponty, Yann, Zanetti, João Paulo Pereira
Publicado 2015

FragAnchor: A Large-Scale Predictor of Glycosylphosphatidylinositol Anchors in Eukaryote Protein Sequences by Qualitative Scoring

por Poisson, Guylaine, Chauve, Cedric, Chen, Xin, Bergeron, Anne
Publicado 2007

The BRaliBase dent—a tale of benchmark design and interpretation

por Löwes, Benedikt, Chauve, Cedric, Ponty, Yann, Giegerich, Robert
Publicado 2017

The gene family-free median of three

por Doerr, Daniel, Balaban, Metin, Feijão, Pedro, Chauve, Cedric
Publicado 2017

Polytomy refinement for the correction of dubious duplications in gene trees

por Lafond, Manuel, Chauve, Cedric, Dondi, Riccardo, El-Mabrouk, Nadia
Publicado 2014

Deconvoluting the diversity of within-host pathogen strains in a multi-locus sequence typing framework

por Gan, Guo Liang, Willie, Elijah, Chauve, Cedric, Chindelevitch, Leonid
Publicado 2019

PlasBin-flow: a flow-based MILP algorithm for plasmid contigs binning

por Mane, Aniket, Faizrahnemoon, Mahsa, Vinař, Tomáš, Brejová, Broňa, Chauve, Cedric
Publicado 2023

plASgraph2: using graph neural networks to detect plasmid contigs from an assembly graph

por Sielemann, Janik, Sielemann, Katharina, Brejová, Broňa, Vinař, Tomáš, Chauve, Cedric
Publicado 2023

Linearization of ancestral multichromosomal genomes

por Maňuch, Ján, Patterson, Murray, Wittler, Roland, Chauve, Cedric, Tannier, Eric
Publicado 2012

Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes

por Anselmetti, Yoann, Duchemin, Wandrille, Tannier, Eric, Chauve, Cedric, Bérard, Sèverine
Publicado 2018

The distance and median problems in the single-cut-or-join model with single-gene duplications

por Mane, Aniket C., Lafond, Manuel, Feijao, Pedro C., Chauve, Cedric
Publicado 2020

HASLR: Fast Hybrid Assembly of Long Reads

por Haghshenas, Ehsan, Asghari, Hossein, Stoye, Jens, Chauve, Cedric, Hach, Faraz
Publicado 2020

Automated identification of maximal differential cell populations in flow cytometry data

por Yue, Alice, Chauve, Cedric, Libbrecht, Maxwell W., Brinkman, Ryan R.
Publicado 2021

Ancestral gene synteny reconstruction improves extant species scaffolding

por Anselmetti, Yoann, Berry, Vincent, Chauve, Cedric, Chateau, Annie, Tannier, Eric, Bérard, Sèverine
Publicado 2015