Pooled Sequencing and Rare Variant Association Tests for Identifying the Determinants of Emerging Drug Resistance in Malaria Parasites

por Cheeseman, Ian H., McDew-White, Marina, Phyo, Aung Pyae, Sriprawat, Kanlaya, Nosten, François, Anderson, Timothy J.C.
Publicado 2015

Close kinship within multiple-genotype malaria parasite infections

por Nkhoma, Standwell C., Nair, Shalini, Cheeseman, Ian H., Rohr-Allegrini, Cherise, Singlam, Sittaporn, Nosten, François, Anderson, Tim J. C.
Publicado 2012

Gene copy number variation throughout the Plasmodium falciparum genome

por Cheeseman, Ian H, Gomez-Escobar, Natalia, Carret, Celine K, Ivens, Alasdair, Stewart, Lindsay B, Tetteh, Kevin KA, Conway, David J
Publicado 2009

High-Resolution Single-Cell Sequencing of Malaria Parasites

por Trevino, Simon G, Nkhoma, Standwell C, Nair, Shalini, Daniel, Benjamin J, Moncada, Karla, Khoswe, Stanley, Banda, Rachel L, Nosten, François, Cheeseman, Ian H
Publicado 2017

Single-cell genomics for dissection of complex malaria infections

por Nair, Shalini, Nkhoma, Standwell C., Serre, David, Zimmerman, Peter A., Gorena, Karla, Daniel, Benjamin J., Nosten, François, Anderson, Timothy J.C., Cheeseman, Ian H.
Publicado 2014

An optimized microarray platform for assaying genomic variation in Plasmodium falciparum field populations

por Tan, John C, Miller, Becky A, Tan, Asako, Patel, Jigar J, Cheeseman, Ian H, Anderson, Tim JC, Manske, Magnus, Maslen, Gareth, Kwiatkowski, Dominic P, Ferdig, Michael T
Publicado 2011

Population Parameters Underlying an Ongoing Soft Sweep in Southeast Asian Malaria Parasites

por Anderson, Timothy J.C., Nair, Shalini, McDew-White, Marina, Cheeseman, Ian H., Nkhoma, Standwell, Bilgic, Fatma, McGready, Rose, Ashley, Elizabeth, Pyae Phyo, Aung, White, Nicholas J., Nosten, François
Publicado 2017

Pairwise growth competitions identify relative fitness relationships among artemisinin resistant Plasmodium falciparum field isolates

por Tirrell, Abigail R., Vendrely, Katelyn M., Checkley, Lisa A., Davis, Sage Z., McDew-White, Marina, Cheeseman, Ian H., Vaughan, Ashley M., Nosten, François H., Anderson, Timothy J. C., Ferdig, Michael T.
Publicado 2019

Plasmodium falciparum genetic crosses in a humanized mouse model

por Vaughan, Ashley M., Pinapati, Richard S., Cheeseman, Ian H., Camargo, Nelly, Fishbaugher, Matthew, Checkley, Lisa A., Nair, Shalini, Hutyra, Carolyn A., Nosten, François H., Anderson, Timothy J. C., Ferdig, Michael T., Kappe, Stefan H. I.
Publicado 2015

Genetic mapping of fitness determinants across the malaria parasite Plasmodium falciparum life cycle

por Li, Xue, Kumar, Sudhir, McDew-White, Marina, Haile, Meseret, Cheeseman, Ian H., Emrich, Scott, Button-Simons, Katie, Nosten, François, Kappe, Stefan H. I., Ferdig, Michael T., Anderson, Tim J. C., Vaughan, Ashley M.
Publicado 2019

Efficient generation of marmoset primordial germ cell-like cells using induced pluripotent stem cells

por Seita, Yasunari, Cheng, Keren, McCarrey, John R, Yadu, Nomesh, Cheeseman, Ian H, Bagwell, Alec, Ross, Corinna N, Santana Toro, Isamar, Yen, Li-hua, Vargas, Sean, Navara, Christopher S, Hermann, Brian P, Sasaki, Kotaro
Publicado 2023

Distinct Roles for FOXP3(+) and FOXP3(−) CD4(+) T Cells in Regulating Cellular Immunity to Uncomplicated and Severe Plasmodium falciparum Malaria

por Walther, Michael, Jeffries, David, Finney, Olivia C., Njie, Madi, Ebonyi, Augustine, Deininger, Susanne, Lawrence, Emma, Ngwa-Amambua, Alfred, Jayasooriya, Shamanthi, Cheeseman, Ian H., Gomez-Escobar, Natalia, Okebe, Joseph, Conway, David J., Riley, Eleanor M.
Publicado 2009

Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance

por Cerqueira, Gustavo C., Cheeseman, Ian H., Schaffner, Steve F., Nair, Shalini, McDew-White, Marina, Phyo, Aung Pyae, Ashley, Elizabeth A., Melnikov, Alexandre, Rogov, Peter, Birren, Bruce W., Nosten, François, Anderson, Timothy J. C., Neafsey, Daniel E.
Publicado 2017

Population Genomic Scan for Candidate Signatures of Balancing Selection to Guide Antigen Characterization in Malaria Parasites

por Amambua-Ngwa, Alfred, Tetteh, Kevin K. A., Manske, Magnus, Gomez-Escobar, Natalia, Stewart, Lindsay B., Deerhake, M. Elizabeth, Cheeseman, Ian H., Newbold, Christopher I., Holder, Anthony A., Knuepfer, Ellen, Janha, Omar, Jallow, Muminatou, Campino, Susana, MacInnis, Bronwyn, Kwiatkowski, Dominic P., Conway, David J.
Publicado 2012

Population Structure Shapes Copy Number Variation in Malaria Parasites

por Cheeseman, Ian H., Miller, Becky, Tan, John C., Tan, Asako, Nair, Shalini, Nkhoma, Standwell C., De Donato, Marcos, Rodulfo, Hectorina, Dondorp, Arjen, Branch, Oralee H., Mesia, Lastenia Ruiz, Newton, Paul, Mayxay, Mayfong, Amambua-Ngwa, Alfred, Conway, David J., Nosten, François, Ferdig, Michael T., Anderson, Tim J. C.
Publicado 2016

Human alveolar macrophage response to Mycobacterium tuberculosis: immune characteristics underlying large inter-individual variability

por Sadee, Wolfgang, Cheeseman, Ian H., Papp, Audrey, Pietrzak, Maciej, Seweryn, Michal, Zhou, Xiaofei, Lin, Shili, Williams, Amanda M., Wewers, Mark D., Curry, Heather M., Zhang, Hao, Cai, Hong, Kunsevi-Kilola, Carine, Tshivhula, Happy, Walzl, Gerhard, Restrepo, Blanca I., Kleynhans, Léanie, Ronacher, Katharina, Wang, Yufeng, Arnett, Eusondia, Azad, Abul K., Schlesinger, Larry S.
Publicado 2023

The power and promise of genetic mapping from Plasmodium falciparum crosses utilizing human liver-chimeric mice

por Button-Simons, Katrina A., Kumar, Sudhir, Carmago, Nelly, Haile, Meseret T., Jett, Catherine, Checkley, Lisa A., Kennedy, Spencer Y., Pinapati, Richard S., Shoue, Douglas A., McDew-White, Marina, Li, Xue, Nosten, François H., Kappe, Stefan H., Anderson, Timothy J. C., Romero-Severson, Jeanne, Ferdig, Michael T., Emrich, Scott J., Vaughan, Ashley M., Cheeseman, Ian H.
Publicado 2021

Optimizing bulk segregant analysis of drug resistance using Plasmodium falciparum genetic crosses conducted in humanized mice

por Brenneman, Katelyn Vendrely, Li, Xue, Kumar, Sudhir, Delgado, Elizabeth, Checkley, Lisa A., Shoue, Douglas A., Reyes, Ann, Abatiyow, Biley A., Haile, Meseret T., Tripura, Rupam, Peto, Tom, Lek, Dysoley, Button-Simons, Katrina A., Kappe, Stefan H.I., Dhorda, Mehul, Nosten, François, Nkhoma, Standwell C., Cheeseman, Ian H., Vaughan, Ashley M., Ferdig, Michael T., Anderson, Tim J.C.
Publicado 2022

A Malaria Parasite Cross Reveals Genetic Determinants of Plasmodium falciparum Growth in Different Culture Media

por Kumar, Sudhir, Li, Xue, McDew-White, Marina, Reyes, Ann, Delgado, Elizabeth, Sayeed, Abeer, Haile, Meseret T., Abatiyow, Biley A., Kennedy, Spencer Y., Camargo, Nelly, Checkley, Lisa A., Brenneman, Katelyn V., Button-Simons, Katrina A., Duraisingh, Manoj T., Cheeseman, Ian H., Kappe, Stefan H. I., Nosten, François, Ferdig, Michael T., Vaughan, Ashley M., Anderson, Tim J. C.
Publicado 2022

A Plasmodium falciparum genetic cross reveals the contributions of pfcrt and plasmepsin II/III to piperaquine drug resistance

por Kane, John, Li, Xue, Kumar, Sudhir, Button-Simons, Katrina A., Brenneman, Katelyn M. Vendrely, Dahlhoff, Haley, Sievert, Mackenzie A.C., Checkley, Lisa A., Shoue, Douglas A., Singh, Puspendra P., Abatiyow, Biley A., Haile, Meseret T., Nair, Shalini, Reyes, Ann, Tripura, Rupam, Peto, Tom, Lek, Dysoley, Kappe, Stefan H.I., Dhorda, Mehul, Nkhoma, Standwell C, Cheeseman, Ian H., Vaughan, Ashley M., Anderson, Timothy J. C., Ferdig, Michael T.
Publicado 2023