VASP-E: Specificity Annotation with a Volumetric Analysis of Electrostatic Isopotentials

por Chen, Brian Y.
Publicado 2014

VASP: A Volumetric Analysis of Surface Properties Yields Insights into Protein-Ligand Binding Specificity

por Chen, Brian Y., Honig, Barry
Publicado 2010

Modeling regionalized volumetric differences in protein-ligand binding cavities

por Chen, Brian Y, Bandyopadhyay, Soutir
Publicado 2012

Exploring Protein Cavities through Rigidity Analysis

por Mason, Stephanie, Chen, Brian Y., Jagodzinski, Filip
Publicado 2018

Precise parallel volumetric comparison of molecular surfaces and electrostatic isopotentials

por Georgiev, Georgi D., Dodd, Kevin F., Chen, Brian Y.
Publicado 2020

An aggregate analysis of many predicted structures to reduce errors in protein structure comparison caused by conformational flexibility

por Godshall, Brian G, Tang, Yisheng, Yang, Wenjie, Chen, Brian Y
Publicado 2013

DeepVASP-E: A Flexible Analysis of Electrostatic Isopotentials for Finding and Explaining Mechanisms that Control Binding Specificity

por Quintana, Felix M., Kong, Zhaoming, He, Lifang, Chen, Brian Y.
Publicado 2022

Ricin uses arginine 235 as an anchor residue to bind to P-proteins of the ribosomal stalk

por Zhou, Yijun, Li, Xiao-Ping, Chen, Brian Y., Tumer, Nilgun E.
Publicado 2017

Analysis of Protein-Protein Interactions for Intermolecular Bond Prediction

por Tam, Justin Z., Palumbo, Talulla, Miwa, Julie M., Chen, Brian Y.
Publicado 2022

HBcompare: Classifying Ligand Binding Preferences with Hydrogen Bond Topology

por Tam, Justin Z., Kong, Zhaoming, Ahmed, Omar, He, Lifang, Chen, Brian Y.
Publicado 2022

Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction

por Bryant, Drew H, Moll, Mark, Chen, Brian Y, Fofanov, Viacheslav Y, Kavraki, Lydia E
Publicado 2010

MarkUs: a server to navigate sequence–structure–function space

por Fischer, Markus, Zhang, Qiangfeng Cliff, Dey, Fabian, Chen, Brian Y., Honig, Barry, Petrey, Donald
Publicado 2011

ColocQuiaL: a QTL-GWAS colocalization pipeline

por Chen, Brian Y, Bone, William P, Lorenz, Kim, Levin, Michael, Ritchie, Marylyn D, Voight, Benjamin F
Publicado 2022

Prediction of enzyme function based on 3D templates of evolutionarily important amino acids

por Kristensen, David M, Ward, R Matthew, Lisewski, Andreas Martin, Erdin, Serkan, Chen, Brian Y, Fofanov, Viacheslav Y, Kimmel, Marek, Kavraki, Lydia E, Lichtarge, Olivier
Publicado 2008

Multi-Trait Genome-Wide Association Study of Atherosclerosis Detects Novel Pleiotropic Loci

por Bellomo, Tiffany R., Bone, William P., Chen, Brian Y., Gawronski, Katerina A. B., Zhang, David, Park, Joseph, Levin, Michael, Tsao, Noah, Klarin, Derek, Lynch, Julie, Assimes, Themistocles L., Gaziano, J. Michael, Wilson, Peter W., Cho, Kelly, Vujkovic, Marijana, O’Donnell, Christopher J., Chang, Kyong-Mi, Tsao, Philip S., Rader, Daniel J., Ritchie, Marylyn D., Damrauer, Scott M., Voight, Benjamin F.
Publicado 2022