The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

por Mavromatis, Konstantinos, Ivanova, Natalia N., Chen, I-Min A., Szeto, Ernest, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado 2009

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

por Liolios, Konstantinos, Chen, I-Min A., Mavromatis, Konstantinos, Tavernarakis, Nektarios, Hugenholtz, Philip, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado 2010

Improving Microbial Genome Annotations in an Integrated Database Context

por Chen, I-Min A., Markowitz, Victor M., Chu, Ken, Anderson, Iain, Mavromatis, Konstantinos, Kyrpides, Nikos C., Ivanova, Natalia N.
Publicado 2013

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

por Pagani, Ioanna, Liolios, Konstantinos, Jansson, Jakob, Chen, I-Min A., Smirnova, Tatyana, Nosrat, Bahador, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado 2012

Genomes OnLine database (GOLD) v.7: updates and new features

por Mukherjee, Supratim, Stamatis, Dimitri, Bertsch, Jon, Ovchinnikova, Galina, Katta, Hema Y, Mojica, Alejandro, Chen, I-Min A, Kyrpides, Nikos C, Reddy, TBK
Publicado 2019

IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes

por Hadjithomas, Michalis, Chen, I-Min A., Chu, Ken, Huang, Jinghua, Ratner, Anna, Palaniappan, Krishna, Andersen, Evan, Markowitz, Victor, Kyrpides, Nikos C., Ivanova, Natalia N.
Publicado 2017

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions

por Markowitz, Victor M., Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Chu, Ken, Chen, I-Min A., Dubchak, Inna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2008

The integrated microbial genomes system: an expanding comparative analysis resource

por Markowitz, Victor M., Chen, I-Min A., Palaniappan, Krishna, Chu, Ken, Szeto, Ernest, Grechkin, Yuri, Ratner, Anna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2010

IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project

por Markowitz, Victor M., Chen, I-Min A., Chu, Ken, Szeto, Ernest, Palaniappan, Krishna, Jacob, Biju, Ratner, Anna, Liolios, Konstantinos, Pagani, Ioanna, Huntemann, Marcel, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2012

IMG/M: a data management and analysis system for metagenomes

por Markowitz, Victor M., Ivanova, Natalia N., Szeto, Ernest, Palaniappan, Krishna, Chu, Ken, Dalevi, Daniel, Chen, I-Min A., Grechkin, Yuri, Dubchak, Inna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Hugenholtz, Philip, Kyrpides, Nikos C.
Publicado 2008

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

por Huntemann, Marcel, Ivanova, Natalia N., Mavromatis, Konstantinos, Tripp, H. James, Paez-Espino, David, Palaniappan, Krishnaveni, Szeto, Ernest, Pillay, Manoj, Chen, I-Min A., Pati, Amrita, Nielsen, Torben, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado 2015

Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

por Huntemann, Marcel, Ivanova, Natalia N., Mavromatis, Konstantinos, Tripp, H. James, Paez-Espino, David, Palaniappan, Krishnaveni, Szeto, Ernest, Pillay, Manoj, Chen, I-Min A., Pati, Amrita, Nielsen, Torben, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado 2016

Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system

por Chen, I-Min A., Markowitz, Victor M., Palaniappan, Krishna, Szeto, Ernest, Chu, Ken, Huang, Jinghua, Ratner, Anna, Pillay, Manoj, Hadjithomas, Michalis, Huntemann, Marcel, Mikhailova, Natalia, Ovchinnikova, Galina, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2016

IMG: the integrated microbial genomes database and comparative analysis system

por Markowitz, Victor M., Chen, I-Min A., Palaniappan, Krishna, Chu, Ken, Szeto, Ernest, Grechkin, Yuri, Ratner, Anna, Jacob, Biju, Huang, Jinghua, Williams, Peter, Huntemann, Marcel, Anderson, Iain, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2012

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

por Huntemann, Marcel, Ivanova, Natalia N., Mavromatis, Konstantinos, Tripp, H. James, Paez-Espino, David, Tennessen, Kristin, Palaniappan, Krishnaveni, Szeto, Ernest, Pillay, Manoj, Chen, I-Min A., Pati, Amrita, Nielsen, Torben, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado 2016

IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes

por Paez-Espino, David, Roux, Simon, Chen, I-Min A, Palaniappan, Krishna, Ratner, Anna, Chu, Ken, Huntemann, Marcel, Reddy, T B K, Pons, Joan Carles, Llabrés, Mercè, Eloe-Fadrosh, Emiley A, Ivanova, Natalia N, Kyrpides, Nikos C
Publicado 2019

IMG/M: the integrated metagenome data management and comparative analysis system

por Markowitz, Victor M., Chen, I-Min A., Chu, Ken, Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Ratner, Anna, Jacob, Biju, Pati, Amrita, Huntemann, Marcel, Liolios, Konstantinos, Pagani, Ioanna, Anderson, Iain, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2012

IMG/M: integrated genome and metagenome comparative data analysis system

por Chen, I-Min A., Markowitz, Victor M., Chu, Ken, Palaniappan, Krishna, Szeto, Ernest, Pillay, Manoj, Ratner, Anna, Huang, Jinghua, Andersen, Evan, Huntemann, Marcel, Varghese, Neha, Hadjithomas, Michalis, Tennessen, Kristin, Nielsen, Torben, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2017

IMG 4 version of the integrated microbial genomes comparative analysis system

por Markowitz, Victor M., Chen, I-Min A., Palaniappan, Krishna, Chu, Ken, Szeto, Ernest, Pillay, Manoj, Ratner, Anna, Huang, Jinghua, Woyke, Tanja, Huntemann, Marcel, Anderson, Iain, Billis, Konstantinos, Varghese, Neha, Mavromatis, Konstantinos, Pati, Amrita, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2014

IMG/M 4 version of the integrated metagenome comparative analysis system

por Markowitz, Victor M., Chen, I-Min A., Chu, Ken, Szeto, Ernest, Palaniappan, Krishna, Pillay, Manoj, Ratner, Anna, Huang, Jinghua, Pagani, Ioanna, Tringe, Susannah, Huntemann, Marcel, Billis, Konstantinos, Varghese, Neha, Tennessen, Kristin, Mavromatis, Konstantinos, Pati, Amrita, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2014