Editorial: RNA modifications and epitranscriptomics, Volume II

por Chen, Kunqi, Picardi, Ernesto, Han, Xiao, Nigita, Giovanni
Publicado 2023

Regulation of programmed cell death by Brd4

por Hu, Jinfeng, Pan, Dun, Li, Guo, Chen, Kunqi, Hu, Xiangming
Publicado 2022

PSI-MOUSE: Predicting Mouse Pseudouridine Sites From Sequence and Genome-Derived Features

por Song, Bowen, Chen, Kunqi, Tang, Yujiao, Ma, Jialin, Meng, Jia, Wei, Zhen
Publicado 2020

m5UPred: A Web Server for the Prediction of RNA 5-Methyluridine Sites from Sequences

por Jiang, Jie, Song, Bowen, Tang, Yujiao, Chen, Kunqi, Wei, Zhen, Meng, Jia
Publicado 2020

Predict Epitranscriptome Targets and Regulatory Functions of N(6)-Methyladenosine (m(6)A) Writers and Erasers

por Song, Yiyou, Xu, Qingru, Wei, Zhen, Zhen, Di, Su, Jionglong, Chen, Kunqi, Meng, Jia
Publicado 2019

PIANO: A Web Server for Pseudouridine-Site (Ψ) Identification and Functional Annotation

por Song, Bowen, Tang, Yujiao, Wei, Zhen, Liu, Gang, Su, Jionglong, Meng, Jia, Chen, Kunqi
Publicado 2020

Prediction of RNA Methylation Status From Gene Expression Data Using Classification and Regression Methods

por Xue, Hao, Wei, Zhen, Chen, Kunqi, Tang, Yujiao, Wu, Xiangyu, Su, Jionglong, Meng, Jia
Publicado 2020

Enhancing Epitranscriptome Module Detection from m(6)A-Seq Data Using Threshold-Based Measurement Weighting Strategy

por Chen, Kunqi, Wei, Zhen, Liu, Hui, de Magalhães, João Pedro, Rong, Rong, Lu, Zhiliang, Meng, Jia
Publicado 2018

m6Acomet: large-scale functional prediction of individual m(6)A RNA methylation sites from an RNA co-methylation network

por Wu, Xiangyu, Wei, Zhen, Chen, Kunqi, Zhang, Qing, Su, Jionglong, Liu, Hui, Zhang, Lin, Meng, Jia
Publicado 2019

m(6)A Reader: Epitranscriptome Target Prediction and Functional Characterization of N(6)-Methyladenosine (m(6)A) Readers

por Zhen, Di, Wu, Yuxuan, Zhang, Yuxin, Chen, Kunqi, Song, Bowen, Xu, Haiqi, Tang, Yujiao, Wei, Zhen, Meng, Jia
Publicado 2020

DRUM: Inference of Disease-Associated m(6)A RNA Methylation Sites From a Multi-Layer Heterogeneous Network

por Tang, Yujiao, Chen, Kunqi, Wu, Xiangyu, Wei, Zhen, Zhang, Song-Yao, Song, Bowen, Zhang, Shao-Wu, Huang, Yufei, Meng, Jia
Publicado 2019

RMDisease: a database of genetic variants that affect RNA modifications, with implications for epitranscriptome pathogenesis

por Chen, Kunqi, Song, Bowen, Tang, Yujiao, Wei, Zhen, Xu, Qingru, Su, Jionglong, de Magalhães, João Pedro, Rigden, Daniel J, Meng, Jia
Publicado 2020

Geographic encoding of transcripts enabled high-accuracy and isoform-aware deep learning of RNA methylation

por Huang, Daiyun, Chen, Kunqi, Song, Bowen, Wei, Zhen, Su, Jionglong, Coenen, Frans, de Magalhães, João Pedro, Rigden, Daniel J, Meng, Jia
Publicado 2022

WHISTLE: a high-accuracy map of the human N(6)-methyladenosine (m(6)A) epitranscriptome predicted using a machine learning approach

por Chen, Kunqi, Wei, Zhen, Zhang, Qing, Wu, Xiangyu, Rong, Rong, Lu, Zhiliang, Su, Jionglong, de Magalhães, João Pedro, Rigden, Daniel J, Meng, Jia
Publicado 2019

Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely occurring RNA modifications

por Song, Zitao, Huang, Daiyun, Song, Bowen, Chen, Kunqi, Song, Yiyou, Liu, Gang, Su, Jionglong, Magalhães, João Pedro de, Rigden, Daniel J., Meng, Jia
Publicado 2021

m(5)C-Atlas: a comprehensive database for decoding and annotating the 5-methylcytosine (m(5)C) epitranscriptome

por Ma, Jiongming, Song, Bowen, Wei, Zhen, Huang, Daiyun, Zhang, Yuxin, Su, Jionglong, de Magalhães, João Pedro, Rigden, Daniel J, Meng, Jia, Chen, Kunqi
Publicado 2021

RMDisease V2.0: an updated database of genetic variants that affect RNA modifications with disease and trait implication

por Song, Bowen, Wang, Xuan, Liang, Zhanmin, Ma, Jiongming, Huang, Daiyun, Wang, Yue, de Magalhães, João Pedro, Rigden, Daniel J, Meng, Jia, Liu, Gang, Chen, Kunqi, Wei, Zhen
Publicado 2022

DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology

por Zhang, Yuxin, Jiang, Jie, Ma, Jiongming, Wei, Zhen, Wang, Yue, Song, Bowen, Meng, Jia, Jia, Guifang, de Magalhães, João Pedro, Rigden, Daniel J, Hang, Daiyun, Chen, Kunqi
Publicado 2022

m(6)A-Atlas: a comprehensive knowledgebase for unraveling the N(6)-methyladenosine (m(6)A) epitranscriptome

por Tang, Yujiao, Chen, Kunqi, Song, Bowen, Ma, Jiongming, Wu, Xiangyu, Xu, Qingru, Wei, Zhen, Su, Jionglong, Liu, Gang, Rong, Rong, Lu, Zhiliang, de Magalhães, João Pedro, Rigden, Daniel J, Meng, Jia
Publicado 2020

Bioinformatics approaches for deciphering the epitranscriptome: Recent progress and emerging topics

por Liu, Lian, Song, Bowen, Ma, Jiani, Song, Yi, Zhang, Song-Yao, Tang, Yujiao, Wu, Xiangyu, Wei, Zhen, Chen, Kunqi, Su, Jionglong, Rong, Rong, Lu, Zhiliang, de Magalhães, João Pedro, Rigden, Daniel J., Zhang, Lin, Zhang, Shao-Wu, Huang, Yufei, Lei, Xiujuan, Liu, Hui, Meng, Jia
Publicado 2020