Predicting and Validating Protein Interactions Using Network Structure

por Chen, Pao-Yang, Deane, Charlotte M., Reinert, Gesine
Publicado 2008

BS Seeker: precise mapping for bisulfite sequencing

por Chen, Pao-Yang, Cokus, Shawn J, Pellegrini, Matteo
Publicado 2010

Epigenetic reprogramming in the mammalian germline

por Hsu, Fei-Man, Clark, Amander, Chen, Pao-Yang
Publicado 2015

Profiling genome-wide DNA methylation

por Yong, Wai-Shin, Hsu, Fei-Man, Chen, Pao-Yang
Publicado 2016

BS-Seeker3: ultrafast pipeline for bisulfite sequencing

por Huang, Kevin Yu Yuan, Huang, Yan-Jiun, Chen, Pao-Yang
Publicado 2018

Computational Methods for Assessing Chromatin Hierarchy

por Chang, Pearl, Gohain, Moloya, Yen, Ming-Ren, Chen, Pao-Yang
Publicado 2018

Behavioral Epigenetics: Perspectives Based on Experience-Dependent Epigenetic Inheritance

por Pang, You-Yuan, Lu, Rita Jui-Hsien, Chen, Pao-Yang
Publicado 2019

BSImp: Imputing Partially Observed Methylation Patterns for Evaluating Methylation Heterogeneity

por Chang, Ya-Ting Sabrina, Yen, Ming-Ren, Chen, Pao-Yang
Publicado 2022

Estimating genome-wide DNA methylation heterogeneity with methylation patterns

por Lin, Pei-Yu, Chang, Ya-Ting, Huang, Yu-Chun, Chen, Pao-Yang
Publicado 2023

MethGET: web-based bioinformatics software for correlating genome-wide DNA methylation and gene expression

por Teng, Chin-Sheng, Wu, Bing-Heng, Yen, Ming-Ren, Chen, Pao-Yang
Publicado 2020

Diversity of Fungal DNA Methyltransferases and Their Association With DNA Methylation Patterns

por Nai, Yu-Shin, Huang, Yu-Chun, Yen, Ming-Ren, Chen, Pao-Yang
Publicado 2021

Deciphering chemotaxis pathways using cross species comparisons

por Hamer, Rebecca, Chen, Pao-Yang, Armitage, Judith P, Reinert, Gesine, Deane, Charlotte M
Publicado 2010

A comparative analysis of DNA methylation across human embryonic stem cell lines

por Chen, Pao-Yang, Feng, Suhua, Joo, Jong Wha Joanne, Jacobsen, Steve E, Pellegrini, Matteo
Publicado 2011

Detecting and prioritizing biosynthetic gene clusters for bioactive compounds in bacteria and fungi

por Tran, Phuong Nguyen, Yen, Ming-Ren, Chiang, Chen-Yu, Lin, Hsiao-Ching, Chen, Pao-Yang
Publicado 2019

Correction: MethylC‑analyzer: a comprehensive downstream pipeline for the analysis of genome‑wide DNA methylation

por Lu, Rita Jui‑Hsien, Lin, Pei‑Yu, Yen, Ming‑Ren, Wu, Bing‑Heng, Chen, Pao‑Yang
Publicado 2023

Rice transformation treatments leave specific epigenome changes beyond tissue culture

por Hsieh, Jo-Wei Allison, Chang, Pearl, Kuang, Lin-Yun, Hsing, Yue-Ie C, Chen, Pao-Yang
Publicado 2023

MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data

por Liao, Wen-Wei, Yen, Ming-Ren, Ju, Evaline, Hsu, Fei-Man, Lam, Larry, Chen, Pao-Yang
Publicado 2015

MethylC-analyzer: a comprehensive downstream pipeline for the analysis of genome-wide DNA methylation

por Lu, Rita Jui-Hsien, Lin, Pei-Yu, Yen, Ming-Ren, Wu, Bing-Heng, Chen, Pao-Yang
Publicado 2023

Non-exhaustive DNA methylation-mediated transposon silencing in the black truffle genome, a complex fungal genome with massive repeat element content

por Montanini, Barbara, Chen, Pao-Yang, Morselli, Marco, Jaroszewicz, Artur, Lopez, David, Martin, Francis, Ottonello, Simone, Pellegrini, Matteo
Publicado 2014

BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data

por Guo, Weilong, Fiziev, Petko, Yan, Weihong, Cokus, Shawn, Sun, Xueguang, Zhang, Michael Q, Chen, Pao-Yang, Pellegrini, Matteo
Publicado 2013