Aberrant DNA methylation defines isoform usage in cancer, with functional implications

por Chen, Yun-Ching, Elnitski, Laura
Publicado 2019

Significant associations between driver gene mutations and DNA methylation alterations across many cancer types

por Chen, Yun-Ching, Gotea, Valer, Margolin, Gennady, Elnitski, Laura
Publicado 2017

CpG island methylator phenotype in adenocarcinomas from the digestive tract: Methods, conclusions, and controversies

por Sánchez-Vega, Francisco, Gotea, Valer, Chen, Yun-Ching, Elnitski, Laura
Publicado 2017

Network Analysis and Transcriptome Profiling Identify Autophagic and Mitochondrial Dysfunctions in SARS-CoV-2 Infection

por Singh, Komudi, Chen, Yun-Ching, Judy, Jennifer T, Seifuddin, Fayaz, Tunc, Ilker, Pirooznia, Mehdi
Publicado 2020

Exonic DNA Sequencing of ERBB4 in Bipolar Disorder

por Goes, Fernando S., Rongione, Michael, Chen, Yun-Ching, Karchin, Rachel, Elhaik, Eran, Potash, James B.
Publicado 2011

IKAP—Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis

por Chen, Yun-Ching, Suresh, Abhilash, Underbayev, Chingiz, Sun, Clare, Singh, Komudi, Seifuddin, Fayaz, Wiestner, Adrian, Pirooznia, Mehdi
Publicado 2019

Bio301: A Web-Based EST Annotation Pipeline That Facilitates Functional Comparison Studies

por Chen, Yen-Chen, Chen, Yun-Ching, Lin, Wen-Dar, Hsiao, Chung-Der, Chiu, Hung-Wen, Ho, Jan-Ming
Publicado 2011

Neuroanatomic, epigenetic, and genetic differences in monozygotic twins discordant for Attention Deficit Hyperactivity Disorder

por Chen, Yun-Ching, Sudre, Gustavo, Sharp, Wendy, Donovan, Frank, Chandrasekharappa, Settara C., Hansen, Nancy, Elnitski, Laura, Shaw, Philip
Publicado 2017

Misregulation of ELK1, AP1, and E12 Transcription Factor Networks Is Associated with Melanoma Progression

por Singh, Komudi, Baird, Michelle, Fischer, Robert, Chaitankar, Vijender, Seifuddin, Fayaz, Chen, Yun-Ching, Tunc, Ilker, Waterman, Clare M., Pirooznia, Mehdi
Publicado 2020

Network Analysis and Transcriptome Profiling Identify Autophagic and Mitochondrial Dysfunctions in SARS-CoV-2 Infection

por Singh, Komudi, Chen, Yun-Ching, Hassanzadeh, Shahin, Han, Kim, Judy, Jennifer T., Seifuddin, Fayaz, Tunc, Ilker, Sack, Michael N., Pirooznia, Mehdi
Publicado 2021

Affected Sib-Pair Analyses Identify Signaling Networks Associated With Social Behavioral Deficits in Autism

por Pirooznia, Mehdi, Niranjan, Tejasvi, Chen, Yun-Ching, Tunc, Ilker, Goes, Fernando S., Avramopoulos, Dimitrios, Potash, James B., Huganir, Richard L., Zandi, Peter P., Wang, Tao
Publicado 2019

A Hybrid Likelihood Model for Sequence-Based Disease Association Studies

por Chen, Yun-Ching, Carter, Hannah, Parla, Jennifer, Kramer, Melissa, Goes, Fernando S., Pirooznia, Mehdi, Zandi, Peter P., McCombie, W. Richard, Potash, James B., Karchin, Rachel
Publicado 2013

A Probabilistic Model to Predict Clinical Phenotypic Traits from Genome Sequencing

por Chen, Yun-Ching, Douville, Christopher, Wang, Cheng, Niknafs, Noushin, Yeo, Grace, Beleva-Guthrie, Violeta, Carter, Hannah, Stenson, Peter D., Cooper, David N., Li, Biao, Mooney, Sean, Karchin, Rachel
Publicado 2014

Genome-Wide Analysis of Off-Target CRISPR/Cas9 Activity in Single-Cell-Derived Human Hematopoietic Stem and Progenitor Cell Clones

por Smith, Richard H., Chen, Yun-Ching, Seifuddin, Fayaz, Hupalo, Daniel, Alba, Camille, Reger, Robert, Tian, Xin, Araki, Daisuke, Dalgard, Clifton L., Childs, Richard W., Pirooznia, Mehdi, Larochelle, Andre
Publicado 2020

lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA

por Seifuddin, Fayaz, Singh, Komudi, Suresh, Abhilash, Judy, Jennifer T., Chen, Yun-Ching, Chaitankar, Vijender, Tunc, Ilker, Ruan, Xiangbo, Li, Ping, Chen, Yi, Cao, Haiming, Lee, Richard S., Goes, Fernando S., Zandi, Peter P., Jafri, M. Saleet, Pirooznia, Mehdi
Publicado 2020

The immune microenvironment shapes transcriptional and genetic heterogeneity in chronic lymphocytic leukemia

por Sun, Clare, Chen, Yun-Ching, Martinez Zurita, Aina, Baptista, Maria Joao, Pittaluga, Stefania, Liu, Delong, Rosebrock, Daniel, Gohil, Satyen Harish, Saba, Nakhle S., Davies-Hill, Theresa, Herman, Sarah E. M., Getz, Gad, Pirooznia, Mehdi, Wu, Catherine J., Wiestner, Adrian
Publicado 2022

Ultra-Small Lung Cysts Impair Diffusion Without Obstructing Air Flow in Lymphangioleiomyomatosis

por Matthew, Brianna P., Hasani, Amir M., Chen, Yun-Ching, Pirooznia, Mehdi, Stylianou, Mario, Rollison, Shirley F., Machado, Tania R., Quade, Nora M., Jones, Amanda M., Julien-Williams, Patricia, Taveira-DaSilva, Angelo, Chen, Marcus Y., Moss, Joel, Wen, Han
Publicado 2021

Natural product myricetin is a pan-KDM4 inhibitor which with poly lactic-co-glycolic acid formulation effectively targets castration-resistant prostate cancer

por Liu, Jai-Shin, Fang, Wei-Kai, Yang, Shan-Min, Wu, Meng-Chen, Chen, Tsan-Jan, Chen, Chih-Ming, Lin, Tung-Yueh, Liu, Kai-Lun, Wu, Chien-Ming, Chen, Yun-Ching, Chuu, Chih-Pin, Wang, Ling-Yu, Hsieh, Hsing-Pang, Kung, Hsing-Jien, Wang, Wen-Ching
Publicado 2022

A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency

por Jones, Wendell, Gong, Binsheng, Novoradovskaya, Natalia, Li, Dan, Kusko, Rebecca, Richmond, Todd A., Johann, Donald J., Bisgin, Halil, Sahraeian, Sayed Mohammad Ebrahim, Bushel, Pierre R., Pirooznia, Mehdi, Wilkins, Katherine, Chierici, Marco, Bao, Wenjun, Basehore, Lee Scott, Lucas, Anne Bergstrom, Burgess, Daniel, Butler, Daniel J., Cawley, Simon, Chang, Chia-Jung, Chen, Guangchun, Chen, Tao, Chen, Yun-Ching, Craig, Daniel J., del Pozo, Angela, Foox, Jonathan, Francescatto, Margherita, Fu, Yutao, Furlanello, Cesare, Giorda, Kristina, Grist, Kira P., Guan, Meijian, Hao, Yingyi, Happe, Scott, Hariani, Gunjan, Haseley, Nathan, Jasper, Jeff, Jurman, Giuseppe, Kreil, David Philip, Łabaj, Paweł, Lai, Kevin, Li, Jianying, Li, Quan-Zhen, Li, Yulong, Li, Zhiguang, Liu, Zhichao, López, Mario Solís, Miclaus, Kelci, Miller, Raymond, Mittal, Vinay K., Mohiyuddin, Marghoob, Pabón-Peña, Carlos, Parsons, Barbara L., Qiu, Fujun, Scherer, Andreas, Shi, Tieliu, Stiegelmeyer, Suzy, Suo, Chen, Tom, Nikola, Wang, Dong, Wen, Zhining, Wu, Leihong, Xiao, Wenzhong, Xu, Chang, Yu, Ying, Zhang, Jiyang, Zhang, Yifan, Zhang, Zhihong, Zheng, Yuanting, Mason, Christopher E., Willey, James C., Tong, Weida, Shi, Leming, Xu, Joshua
Publicado 2021