gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes

por Simirenko, Lisa, Cheng, Jan-Fang, Blaby, Ian
Publicado 2023

Chromosomal integration of complex DNA constructs using CRAGE and CRAGE-Duet systems

por Zhao, Zhiying, Cheng, Jan-Fang, Yoshikuni, Yasuo
Publicado 2022

An Independent Genome Duplication Inferred from Hox Paralogs in the American Paddlefish—A Representative Basal Ray-Finned Fish and Important Comparative Reference

por Crow, Karen D., Smith, Christopher D., Cheng, Jan-Fang, Wagner, Günter P., Amemiya, Chris T.
Publicado 2012

Detection of weakly conserved ancestral mammalian regulatory sequences by primate comparisons

por Wang, Qian-fei, Prabhakar, Shyam, Chanan, Sumita, Cheng, Jan-Fang, Rubin, Edward M, Boffelli, Dario
Publicado 2007

A genome-wide screen identifies a single β-defensin gene cluster in the chicken: implications for the origin and evolution of mammalian defensins

por Xiao, Yanjing, Hughes, Austin L, Ando, Junko, Matsuda, Yoichi, Cheng, Jan-Fang, Skinner-Noble, Donald, Zhang, Guolong
Publicado 2004

Repeated Cis-Regulatory Tuning of a Metabolic Bottleneck Gene during Evolution

por Kuang, Meihua Christina, Kominek, Jacek, Alexander, William G, Cheng, Jan-Fang, Wrobel, Russell L, Hittinger, Chris Todd
Publicado 2018

Bacterial genome editing by coupling Cre-lox and CRISPR-Cas9 systems

por Liu, Hualan, Robinson, David S., Wu, Zong-Yen, Kuo, Rita, Yoshikuni, Yasuo, Blaby, Ian K., Cheng, Jan-Fang
Publicado 2020

Genome Analysis of Multidrug-Resistant Shewanella algae Isolated From Human Soft Tissue Sample

por Huang, Yao-Ting, Tang, Yu-Yu, Cheng, Jan-Fang, Wu, Zong-Yen, Mao, Yan-Chiao, Liu, Po-Yu
Publicado 2018

Reversal of carbapenem-resistance in Shewanella algae by CRISPR/Cas9 genome editing

por Wu, Zong-Yen, Huang, Yao-Ting, Chao, Wen-Cheng, Ho, Shu-Peng, Cheng, Jan-Fang, Liu, Po-Yu
Publicado 2019

Decontamination of MDA Reagents for Single Cell Whole Genome Amplification

por Woyke, Tanja, Sczyrba, Alexander, Lee, Janey, Rinke, Christian, Tighe, Damon, Clingenpeel, Scott, Malmstrom, Rex, Stepanauskas, Ramunas, Cheng, Jan-Fang
Publicado 2011

A viability-linked metagenomic analysis of cleanroom environments: eukarya, prokaryotes, and viruses

por Weinmaier, Thomas, Probst, Alexander J., La Duc, Myron T., Ciobanu, Doina, Cheng, Jan-Fang, Ivanova, Natalia, Rattei, Thomas, Vaishampayan, Parag
Publicado 2015

Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.)

por Bahri, Bochra A., Daverdin, Guillaume, Xu, Xiangyang, Cheng, Jan-Fang, Barry, Kerrie W., Brummer, E. Charles, Devos, Katrien M.
Publicado 2018

Protocol for single-cell isolation and genome amplification of environmental microbial eukaryotes for genomic analysis

por Ciobanu, Doina, Chan, Sandy, Ahrendt, Steven, Quandt, C. Alisha, Benny, Gerald L., Smith, Matthew E., James, Timothy Y., Cheng, Jan-Fang
Publicado 2022

Generation of Long Insert Pairs Using a Cre-LoxP Inverse PCR Approach

por Peng, Ze, Zhao, Zhiying, Nath, Nandita, Froula, Jeff L., Clum, Alicia, Zhang, Tao, Cheng, Jan-fang, Copeland, Alex C., Pennacchio, Len A., Chen, Feng
Publicado 2012

Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community

por Bowers, Robert M., Clum, Alicia, Tice, Hope, Lim, Joanne, Singh, Kanwar, Ciobanu, Doina, Ngan, Chew Yee, Cheng, Jan-Fang, Tringe, Susannah G., Woyke, Tanja
Publicado 2015

Primate-specific evolution of an LDLR enhancer

por Wang, Qian-fei, Prabhakar, Shyam, Wang, Qianben, Moses, Alan M, Chanan, Sumita, Brown, Myles, Eisen, Michael B, Cheng, Jan-Fang, Rubin, Edward M, Boffelli, Dario
Publicado 2006

Genome characterization of bile-isolated Shewanella algae ACCC

por Tseng, Shu-Ying, Tung, Kwong-Chung, Cheng, Jan-Fang, Lee, Yi-Hsuan, Wu, Zong-Yen, Hong, Yu-Kai, Chen, Shi-Yu, Huang, Yao-Ting, Liu, Po-Yu
Publicado 2018

Next generation sequencing data of a defined microbial mock community

por Singer, Esther, Andreopoulos, Bill, Bowers, Robert M., Lee, Janey, Deshpande, Shweta, Chiniquy, Jennifer, Ciobanu, Doina, Klenk, Hans-Peter, Zane, Matthew, Daum, Christopher, Clum, Alicia, Cheng, Jan-Fang, Copeland, Alex, Woyke, Tanja
Publicado 2016

Comparative genomics reveals functional transcriptional control sequences in the Prop1 gene

por Ward, Robert D., Davis, Shannon W., Cho, MinChul, Esposito, Constance, Lyons, Robert H., Cheng, Jan-Fang, Rubin, Edward M., Rhodes, Simon J., Raetzman, Lori T., Smith, Timothy P. L., Camper, Sally A.
Publicado 2007

One Bacterial Cell, One Complete Genome

por Woyke, Tanja, Tighe, Damon, Mavromatis, Konstantinos, Clum, Alicia, Copeland, Alex, Schackwitz, Wendy, Lapidus, Alla, Wu, Dongying, McCutcheon, John P., McDonald, Bradon R., Moran, Nancy A., Bristow, James, Cheng, Jan-Fang
Publicado 2010