Quantitative biomedical annotation using medical subject heading over-representation profiles (MeSHOPs)

por Cheung, Warren A, Ouellette, BF Francis, Wasserman, Wyeth W
Publicado 2012

Inferring novel gene-disease associations using Medical Subject Heading Over-representation Profiles

por Cheung, Warren A, Ouellette, BF Francis, Wasserman, Wyeth W
Publicado 2012

Compensating for literature annotation bias when predicting novel drug-disease relationships through Medical Subject Heading Over-representation Profile (MeSHOP) similarity

por Cheung, Warren A, Ouellette, BF Francis, Wasserman, Wyeth W
Publicado 2013

Risk of re-identification of epigenetic methylation data: a more nuanced response is needed

por Joly, Yann, Dyke, Stephanie OM, Cheung, Warren A, Rothstein, Mark A, Pastinen, Tomi
Publicado 2015

Adverse Maternal Environments Perturb Hepatic DNA Methylome and Transcriptome Prior to the Adult-Onset Non-Alcoholic Fatty Liver Disease in Mouse Offspring

por Fu, Qi, Cheung, Warren A., Majnik, Amber V., Ke, Xingrao, Pastinen, Tomi, Lane, Robert H.
Publicado 2023

Immune cell residency in the nasal mucosa may partially explain respiratory disease severity across the age range

por Winkley, Konner, Banerjee, Dithi, Bradley, Todd, Koseva, Boryana, Cheung, Warren A., Selvarangan, Rangaraj, Pastinen, Tomi, Grundberg, Elin
Publicado 2021

Epigenome data release: a participant-centered approach to privacy protection

por Dyke, Stephanie O. M., Cheung, Warren A., Joly, Yann, Ammerpohl, Ole, Lutsik, Pavlo, Rothstein, Mark A., Caron, Maxime, Busche, Stephan, Bourque, Guillaume, Rönnblom, Lars, Flicek, Paul, Beck, Stephan, Hirst, Martin, Stunnenberg, Henk, Siebert, Reiner, Walter, Jörn, Pastinen, Tomi
Publicado 2015

Population whole-genome bisulfite sequencing across two tissues highlights the environment as the principal source of human methylome variation

por Busche, Stephan, Shao, Xiaojian, Caron, Maxime, Kwan, Tony, Allum, Fiona, Cheung, Warren A., Ge, Bing, Westfall, Susan, Simon, Marie-Michelle, Barrett, Amy, Bell, Jordana T., McCarthy, Mark I., Deloukas, Panos, Blanchette, Mathieu, Bourque, Guillaume, Spector, Timothy D., Lathrop, Mark, Pastinen, Tomi, Grundberg, Elin
Publicado 2015

Extravillous trophoblast cell lineage development is associated with active remodeling of the chromatin landscape

por Varberg, Kaela M., Dominguez, Esteban M., Koseva, Boryana, Varberg, Joseph M., McNally, Ross P., Moreno-Irusta, Ayelen, Wesley, Emily R., Iqbal, Khursheed, Cheung, Warren A., Schwendinger-Schreck, Carl, Smail, Craig, Okae, Hiroaki, Arima, Takahiro, Lydic, Michael, Holoch, Kristin, Marsh, Courtney, Soares, Michael J., Grundberg, Elin
Publicado 2023

Dissecting features of epigenetic variants underlying cardiometabolic risk using full-resolution epigenome profiling in regulatory elements

por Allum, Fiona, Hedman, Åsa K., Shao, Xiaojian, Cheung, Warren A., Vijay, Jinchu, Guénard, Frédéric, Kwan, Tony, Simon, Marie-Michelle, Ge, Bing, Moura, Cristiano, Boulier, Elodie, Rönnblom, Lars, Bernatsky, Sasha, Lathrop, Mark, McCarthy, Mark I., Deloukas, Panos, Tchernof, André, Pastinen, Tomi, Vohl, Marie-Claude, Grundberg, Elin
Publicado 2019

Direct haplotype-resolved 5-base HiFi sequencing for genome-wide profiling of hypermethylation outliers in a rare disease cohort

por Cheung, Warren A., Johnson, Adam F., Rowell, William J., Farrow, Emily, Hall, Richard, Cohen, Ana S. A., Means, John C., Zion, Tricia N., Portik, Daniel M., Saunders, Christopher T., Koseva, Boryana, Bi, Chengpeng, Truong, Tina K., Schwendinger-Schreck, Carl, Yoo, Byunggil, Johnston, Jeffrey J., Gibson, Margaret, Evrony, Gilad, Rizzo, William B., Thiffault, Isabelle, Younger, Scott T., Curran, Tom, Wenger, Aaron M., Grundberg, Elin, Pastinen, Tomi
Publicado 2023

Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome

por Cheung, Warren A., Shao, Xiaojian, Morin, Andréanne, Siroux, Valérie, Kwan, Tony, Ge, Bing, Aïssi, Dylan, Chen, Lu, Vasquez, Louella, Allum, Fiona, Guénard, Frédéric, Bouzigon, Emmanuelle, Simon, Marie-Michelle, Boulier, Elodie, Redensek, Adriana, Watt, Stephen, Datta, Avik, Clarke, Laura, Flicek, Paul, Mead, Daniel, Paul, Dirk S., Beck, Stephan, Bourque, Guillaume, Lathrop, Mark, Tchernof, André, Vohl, Marie-Claude, Demenais, Florence, Pin, Isabelle, Downes, Kate, Stunnenberg, Hendrick G., Soranzo, Nicole, Pastinen, Tomi, Grundberg, Elin
Publicado 2017

Correction to: Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome

por Cheung, Warren A., Shao, Xiaojian, Morin, Andréanne, Siroux, Valérie, Kwan, Tony, Ge, Bing, Aïssi, Dylan, Chen, Lu, Vasquez, Louella, Allum, Fiona, Guénard, Frédéric, Bouzigon, Emmanuelle, Simon, Marie-Michelle, Boulier, Elodie, Redensek, Adriana, Watt, Stephen, Datta, Avik, Clarke, Laura, Flicek, Paul, Mead, Daniel, Paul, Dirk S., Beck, Stephan, Bourque, Guillaume, Lathrop, Mark, Tchernof, André, Vohl, Marie-Claude, Demenais, Florence, Pin, Isabelle, Downes, Kate, Stunnenberg, Hendrick G., Soranzo, Nicole, Pastinen, Tomi, Grundberg, Elin
Publicado 2019

H3K27M induces defective chromatin spread of PRC2-mediated repressive H3K27me2/me3 and is essential for glioma tumorigenesis

por Harutyunyan, Ashot S., Krug, Brian, Chen, Haifen, Papillon-Cavanagh, Simon, Zeinieh, Michele, De Jay, Nicolas, Deshmukh, Shriya, Chen, Carol C. L., Belle, Jad, Mikael, Leonie G., Marchione, Dylan M., Li, Rui, Nikbakht, Hamid, Hu, Bo, Cagnone, Gael, Cheung, Warren A., Mohammadnia, Abdulshakour, Bechet, Denise, Faury, Damien, McConechy, Melissa K, Pathania, Manav, Jain, Siddhant U., Ellezam, Benjamin, Weil, Alexander G., Montpetit, Alexandre, Salomoni, Paolo, Pastinen, Tomi, Lu, Chao, Lewis, Peter W., Garcia, Benjamin A., Kleinman, Claudia L., Jabado, Nada, Majewski, Jacek
Publicado 2019

Increased DNA methylation variability in type 1 diabetes across three immune effector cell types

por Paul, Dirk S., Teschendorff, Andrew E., Dang, Mary A.N., Lowe, Robert, Hawa, Mohammed I., Ecker, Simone, Beyan, Huriya, Cunningham, Stephanie, Fouts, Alexandra R., Ramelius, Anita, Burden, Frances, Farrow, Samantha, Rowlston, Sophia, Rehnstrom, Karola, Frontini, Mattia, Downes, Kate, Busche, Stephan, Cheung, Warren A., Ge, Bing, Simon, Marie-Michelle, Bujold, David, Kwan, Tony, Bourque, Guillaume, Datta, Avik, Lowy, Ernesto, Clarke, Laura, Flicek, Paul, Libertini, Emanuele, Heath, Simon, Gut, Marta, Gut, Ivo G, Ouwehand, Willem H., Pastinen, Tomi, Soranzo, Nicole, Hofer, Sabine E., Karges, Beate, Meissner, Thomas, Boehm, Bernhard O., Cilio, Corrado, Elding Larsson, Helena, Lernmark, Åke, Steck, Andrea K., Rakyan, Vardhman K., Beck, Stephan, Leslie, R. David
Publicado 2016

The Transcription Factor Encyclopedia

por Yusuf, Dimas, Butland, Stefanie L, Swanson, Magdalena I, Bolotin, Eugene, Ticoll, Amy, Cheung, Warren A, Cindy Zhang, Xiao Yu, Dickman, Christopher TD, Fulton, Debra L, Lim, Jonathan S, Schnabl, Jake M, Ramos, Oscar HP, Vasseur-Cognet, Mireille, de Leeuw, Charles N, Simpson, Elizabeth M, Ryffel, Gerhart U, Lam, Eric W-F, Kist, Ralf, Wilson, Miranda SC, Marco-Ferreres, Raquel, Brosens, Jan J, Beccari, Leonardo L, Bovolenta, Paola, Benayoun, Bérénice A, Monteiro, Lara J, Schwenen, Helma DC, Grontved, Lars, Wederell, Elizabeth, Mandrup, Susanne, Veitia, Reiner A, Chakravarthy, Harini, Hoodless, Pamela A, Mancarelli, M Michela, Torbett, Bruce E, Banham, Alison H, Reddy, Sekhar P, Cullum, Rebecca L, Liedtke, Michaela, Tschan, Mario P, Vaz, Michelle, Rizzino, Angie, Zannini, Mariastella, Frietze, Seth, Farnham, Peggy J, Eijkelenboom, Astrid, Brown, Philip J, Laperrière, David, Leprince, Dominique, de Cristofaro, Tiziana, Prince, Kelly L, Putker, Marrit, del Peso, Luis, Camenisch, Gieri, Wenger, Roland H, Mikula, Michal, Rozendaal, Marieke, Mader, Sylvie, Ostrowski, Jerzy, Rhodes, Simon J, Van Rechem, Capucine, Boulay, Gaylor, Olechnowicz, Sam WZ, Breslin, Mary B, Lan, Michael S, Nanan, Kyster K, Wegner, Michael, Hou, Juan, Mullen, Rachel D, Colvin, Stephanie C, Noy, Peter John, Webb, Carol F, Witek, Matthew E, Ferrell, Scott, Daniel, Juliet M, Park, Jason, Waldman, Scott A, Peet, Daniel J, Taggart, Michael, Jayaraman, Padma-Sheela, Karrich, Julien J, Blom, Bianca, Vesuna, Farhad, O'Geen, Henriette, Sun, Yunfu, Gronostajski, Richard M, Woodcroft, Mark W, Hough, Margaret R, Chen, Edwin, Europe-Finner, G Nicholas, Karolczak-Bayatti, Magdalena, Bailey, Jarrod, Hankinson, Oliver, Raman, Venu, LeBrun, David P, Biswal, Shyam, Harvey, Christopher J, DeBruyne, Jason P, Hogenesch, John B, Hevner, Robert F, Héligon, Christophe, Luo, Xin M, Blank, Marissa Cathleen, Millen, Kathleen Joyce, Sharlin, David S, Forrest, Douglas, Dahlman-Wright, Karin, Zhao, Chunyan, Mishima, Yuriko, Sinha, Satrajit, Chakrabarti, Rumela, Portales-Casamar, Elodie, Sladek, Frances M, Bradley, Philip H, Wasserman, Wyeth W
Publicado 2012