Integrated single-cell sequencing of 5-hydroxymethylcytosine and genomic DNA using scH&G-seq

por Chialastri, Alex, Wangsanuwat, Chatarin, Dey, Siddharth S.
Publicado 2021

Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity

por Chialastri, Alex, Sarkar, Saumya, Schauer, Elizabeth E., Lamba, Shyl, Dey, Siddharth S.
Publicado 2023

A probabilistic framework for cellular lineage reconstruction using integrated single-cell 5-hydroxymethylcytosine and genomic DNA sequencing

por Wangsanuwat, Chatarin, Chialastri, Alex, Aldeguer, Javier F., Rivron, Nicolas C., Dey, Siddharth S.
Publicado 2021

An Extended Culture System that Supports Human Primordial Germ Cell-like Cell Survival and Initiation of DNA Methylation Erasure

por Gell, Joanna J., Liu, Wanlu, Sosa, Enrique, Chialastri, Alex, Hancock, Grace, Tao, Yu, Wamaitha, Sissy E., Bower, Grace, Dey, Siddharth S., Clark, Amander T.
Publicado 2020

scDam&T‐seq combines DNA adenine methyltransferase-based labeling of protein-DNA contact sites with transcriptome sequencing to analyze regulatory programs in single cells

por Rooijers, Koos, Markodimitraki, Corina M., Rang, Franka J., de Vries, Sandra S., Chialastri, Alex, de Luca, Kim L., Mooijman, Dylan, Dey, Siddharth S., Kind, Jop
Publicado 2019

Control over single-cell distribution of G1 lengths by WNT governs pluripotency

por Jang, Jiwon, Han, Dasol, Golkaram, Mahdi, Audouard, Morgane, Liu, Guojing, Bridges, Daniel, Hellander, Stefan, Chialastri, Alex, Dey, Siddharth S., Petzold, Linda R., Kosik, Kenneth S.
Publicado 2019

Strand-specific single-cell methylomics reveals distinct modes of DNA demethylation dynamics during early mammalian development

por Sen, Maya, Mooijman, Dylan, Chialastri, Alex, Boisset, Jean-Charles, Popovic, Mina, Heindryckx, Björn, Chuva de Sousa Lopes, Susana M., Dey, Siddharth S., van Oudenaarden, Alexander
Publicado 2021