Polymer physics of chromosome large-scale 3D organisation

por Chiariello, Andrea M., Annunziatella, Carlo, Bianco, Simona, Esposito, Andrea, Nicodemi, Mario
Publicado 2016

Structure of the human chromosome interaction network

por Sarnataro, Sergio, Chiariello, Andrea M., Esposito, Andrea, Prisco, Antonella, Nicodemi, Mario
Publicado 2017

Polymer physics indicates chromatin folding variability across single-cells results from state degeneracy in phase separation

por Conte, Mattia, Fiorillo, Luca, Bianco, Simona, Chiariello, Andrea M., Esposito, Andrea, Nicodemi, Mario
Publicado 2020

Phase separation of ecDNA aggregates establishes in-trans contact domains boosting selective MYC regulatory interactions

por Conte, Mattia, Matteuzzi, Tommaso, Esposito, Andrea, Chiariello, Andrea M., Bianco, Simona, Vercellone, Francesca, Nicodemi, Mario
Publicado 2023

A Polymer Physics Investigation of the Architecture of the Murine Orthologue of the 7q11.23 Human Locus

por Chiariello, Andrea M., Esposito, Andrea, Annunziatella, Carlo, Bianco, Simona, Fiorillo, Luca, Prisco, Antonella, Nicodemi, Mario
Publicado 2017

The Physics of DNA Folding: Polymer Models and Phase-Separation

por Esposito, Andrea, Abraham, Alex, Conte, Mattia, Vercellone, Francesca, Prisco, Antonella, Bianco, Simona, Chiariello, Andrea M.
Publicado 2022

Loop-extrusion and polymer phase-separation can co-exist at the single-molecule level to shape chromatin folding

por Conte, Mattia, Irani, Ehsan, Chiariello, Andrea M., Abraham, Alex, Bianco, Simona, Esposito, Andrea, Nicodemi, Mario
Publicado 2022

Multiscale modelling of chromatin 4D organization in SARS-CoV-2 infected cells

por Chiariello, Andrea M., Abraham, Alex, Bianco, Simona, Esposito, Andrea, Vercellone, Francesca, Conte, Mattia, Fontana, Andrea, Nicodemi, Mario
Publicado 2023

8-oxodG accumulation within super-enhancers marks fragile CTCF-mediated chromatin loops

por Scala, Giovanni, Gorini, Francesca, Ambrosio, Susanna, Chiariello, Andrea M, Nicodemi, Mario, Lania, Luigi, Majello, Barbara, Amente, Stefano
Publicado 2022

Polymer models of chromatin organization

por Barbieri, Mariano, Scialdone, Antonio, Piccolo, Andrea, Chiariello, Andrea M., di Lanno, Ciro, Prisco, Antonella, Pombo, Ana, Nicodemi, Mario
Publicado 2013

Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin

por Fiorillo, Luca, Musella, Francesco, Conte, Mattia, Kempfer, Rieke, Chiariello, Andrea M., Bianco, Simona, Kukalev, Alexander, Irastorza-Azcarate, Ibai, Esposito, Andrea, Abraham, Alex, Prisco, Antonella, Pombo, Ana, Nicodemi, Mario
Publicado 2021

Publisher Correction: Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin

por Fiorillo, Luca, Musella, Francesco, Conte, Mattia, Kempfer, Rieke, Chiariello, Andrea M., Bianco, Simona, Kukalev, Alexander, Irastorza-Azcarate, Ibai, Esposito, Andrea, Abraham, Alex, Prisco, Antonella, Pombo, Ana, Nicodemi, Mario
Publicado 2021

Further Delineation of Duplications of ARX Locus Detected in Male Patients with Varying Degrees of Intellectual Disability

por Poeta, Loredana, Malacarne, Michela, Padula, Agnese, Drongitis, Denise, Verrillo, Lucia, Lioi, Maria Brigida, Chiariello, Andrea M., Bianco, Simona, Nicodemi, Mario, Piccione, Maria, Salzano, Emanuela, Coviello, Domenico, Miano, Maria Giuseppina
Publicado 2022

Hmga2 protein loss alters nuclear envelope and 3D chromatin structure

por Divisato, Giuseppina, Chiariello, Andrea M., Esposito, Andrea, Zoppoli, Pietro, Zambelli, Federico, Elia, Maria Antonietta, Pesole, Graziano, Incarnato, Danny, Passaro, Fabiana, Piscitelli, Silvia, Oliviero, Salvatore, Nicodemi, Mario, Parisi, Silvia, Russo, Tommaso
Publicado 2022

Divergent Transcription of the Nkx2-5 Locus Generates Two Enhancer RNAs with Opposing Functions

por Salamon, Irene, Serio, Simone, Bianco, Simona, Pagiatakis, Christina, Crasto, Silvia, Chiariello, Andrea M., Conte, Mattia, Cattaneo, Paola, Fiorillo, Luca, Felicetta, Arianna, di Pasquale, Elisa, Kunderfranco, Paolo, Nicodemi, Mario, Papait, Roberto, Condorelli, Gianluigi
Publicado 2020

Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C

por Beagrie, Robert A., Thieme, Christoph J., Annunziatella, Carlo, Baugher, Catherine, Zhang, Yingnan, Schueler, Markus, Kukalev, Alexander, Kempfer, Rieke, Chiariello, Andrea M., Bianco, Simona, Li, Yichao, Davis, Trenton, Scialdone, Antonio, Welch, Lonnie R., Nicodemi, Mario, Pombo, Ana
Publicado 2023

Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains

por Oudelaar, A. Marieke, Davies, James O.J., Hanssen, Lars L.P., Telenius, Jelena M., Schwessinger, Ron, Liu, Yu, Brown, Jill M., Downes, Damien J., Chiariello, Andrea M., Bianco, Simona, Nicodemi, Mario, Buckle, Veronica J., Dekker, Job, Higgs, Douglas R., Hughes, Jim R.
Publicado 2018

Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation

por Fraser, James, Ferrai, Carmelo, Chiariello, Andrea M, Schueler, Markus, Rito, Tiago, Laudanno, Giovanni, Barbieri, Mariano, Moore, Benjamin L, Kraemer, Dorothee CA, Aitken, Stuart, Xie, Sheila Q, Morris, Kelly J, Itoh, Masayoshi, Kawaji, Hideya, Jaeger, Ines, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair RR, Semple, Colin A, Dostie, Josée, Pombo, Ana, Nicodemi, Mario
Publicado 2015

Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes

por Ringel, Alessa R., Szabo, Quentin, Chiariello, Andrea M., Chudzik, Konrad, Schöpflin, Robert, Rothe, Patricia, Mattei, Alexandra L., Zehnder, Tobias, Harnett, Dermot, Laupert, Verena, Bianco, Simona, Hetzel, Sara, Glaser, Juliane, Phan, Mai H.Q., Schindler, Magdalena, Ibrahim, Daniel M., Paliou, Christina, Esposito, Andrea, Prada-Medina, Cesar A., Haas, Stefan A., Giere, Peter, Vingron, Martin, Wittler, Lars, Meissner, Alexander, Nicodemi, Mario, Cavalli, Giacomo, Bantignies, Frédéric, Mundlos, Stefan, Robson, Michael I.
Publicado 2022

Cell-type specialization is encoded by specific chromatin topologies

por Winick-Ng, Warren, Kukalev, Alexander, Harabula, Izabela, Zea-Redondo, Luna, Szabó, Dominik, Meijer, Mandy, Serebreni, Leonid, Zhang, Yingnan, Bianco, Simona, Chiariello, Andrea M., Irastorza-Azcarate, Ibai, Thieme, Christoph J., Sparks, Thomas M., Carvalho, Sílvia, Fiorillo, Luca, Musella, Francesco, Irani, Ehsan, Torlai Triglia, Elena, Kolodziejczyk, Aleksandra A., Abentung, Andreas, Apostolova, Galina, Paul, Eleanor J., Franke, Vedran, Kempfer, Rieke, Akalin, Altuna, Teichmann, Sarah A., Dechant, Georg, Ungless, Mark A., Nicodemi, Mario, Welch, Lonnie, Castelo-Branco, Gonçalo, Pombo, Ana
Publicado 2021