EvalMSA: A Program to Evaluate Multiple Sequence Alignments and Detect Outliers

por Chiner-Oms, Alvaro, González-Candelas, Fernando
Publicado 2016

Gene expression models based on a reference laboratory strain are poor predictors of Mycobacterium tuberculosis complex transcriptional diversity

por Chiner-Oms, Álvaro, González-Candelas, Fernando, Comas, Iñaki
Publicado 2018

Evolutionary Dissection of the Dot/Icm System Based on Comparative Genomics of 58 Legionella Species

por Gomez-Valero, Laura, Chiner-Oms, Alvaro, Comas, Iñaki, Buchrieser, Carmen
Publicado 2019

Gene evolutionary trajectories in Mycobacterium tuberculosis reveal temporal signs of selection

por Chiner-Oms, Álvaro, López, Mariana G., Moreno-Molina, Miguel, Furió, Victoria, Comas, Iñaki
Publicado 2022

Glucocorticoid-dependent transcription in skin requires epidermal expression of the glucocorticoid receptor and is modulated by the mineralocorticoid receptor

por Sevilla, Lisa M., Bigas, Judit, Chiner-Oms, Álvaro, Comas, Iñaki, Sentandreu, Vicente, Pérez, Paloma
Publicado 2020

An evolutionary functional genomics approach identifies novel candidate regions involved in isoniazid resistance in Mycobacterium tuberculosis

por Furió, Victoria, Moreno-Molina, Miguel, Chiner-Oms, Álvaro, Villamayor, Luis M., Torres-Puente, Manuela, Comas, Iñaki
Publicado 2021

Towards next-generation diagnostics for tuberculosis: identification of novel molecular targets by large-scale comparative genomics

por Goig, Galo A, Torres-Puente, Manuela, Mariner-Llicer, Carla, Villamayor, Luis M, Chiner-Oms, Álvaro, Gil-Brusola, Ana, Borrás, Rafael, Comas Espadas, Iñaki
Publicado 2020

Accuracy of an amplicon-sequencing nanopore approach to identify variants in tuberculosis drug-resistance-associated genes

por Mariner-Llicer, Carla, Goig, Galo A., Zaragoza-Infante, Laura, Torres-Puente, Manuela, Villamayor, Luis, Navarro, David, Borras, Rafael, Chiner-Oms, Álvaro, Comas, Iñaki
Publicado 2021

Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex

por Chiner-Oms, Álvaro, Berney, Michael, Boinett, Christine, González-Candelas, Fernando, Young, Douglas B., Gagneux, Sebastien, Jacobs, William R., Parkhill, Julian, Cortes, Teresa, Comas, Iñaki
Publicado 2019

Genomic analysis of Mycobacterium brumae sustains its nonpathogenic and immunogenic phenotype

por Renau-Mínguez, Chantal, Herrero-Abadía, Paula, Ruiz-Rodriguez, Paula, Sentandreu, Vicente, Torrents, Eduard, Chiner-Oms, Álvaro, Torres-Puente, Manuela, Comas, Iñaki, Julián, Esther, Coscolla, Mireia
Publicado 2023

Cryptic Resistance Mutations Associated With Misdiagnoses of Multidrug-Resistant Tuberculosis

por Cancino-Muñoz, Irving, Moreno-Molina, Miguel, Furió, Victoria, Goig, Galo A, Torres-Puente, Manuela, Chiner-Oms, Álvaro, Villamayor, Luis M, Sanz, Francisco, Guna-Serrano, María Remedio, Comas, Iñaki
Publicado 2019

Spatial and temporal distribution of SARS-CoV-2 diversity circulating in wastewater

por Pérez-Cataluña, Alba, Chiner-Oms, Álvaro, Cuevas-Ferrando, Enric, Díaz-Reolid, Azahara, Falcó, Irene, Randazzo, Walter, Girón-Guzmán, Inés, Allende, Ana, Bracho, María A., Comas, Iñaki, Sánchez, Gloria
Publicado 2022

Whole genome sequencing–based analysis of tuberculosis (TB) in migrants: rapid tools for cross-border surveillance and to distinguish between recent transmission in the host countr...

por Abascal, Estefanía, Pérez-Lago, Laura, Martínez-Lirola, Miguel, Chiner-Oms, Álvaro, Herranz, Marta, Chaoui, Imane, Comas, Iñaki, El Messaoudi, My Driss, Cárdenas, José Antonio Garrido, Santantón, Sheila, Bouza, Emilio, García-de-Viedma, Darío
Publicado 2019

Mycobacterium tuberculosis Acquires Limited Genetic Diversity in Prolonged Infections, Reactivations and Transmissions Involving Multiple Hosts

por Herranz, Marta, Pole, Ilva, Ozere, Iveta, Chiner-Oms, Álvaro, Martínez-Lirola, Miguel, Pérez-García, Felipe, Gijón, Paloma, Serrano, María Jesús Ruiz, Romero, Laura Clotet, Cuevas, Oscar, Comas, Iñaki, Bouza, Emilio, Pérez-Lago, Laura, García-de-Viedma, Darío
Publicado 2018

Simplified Model to Survey Tuberculosis Transmission in Countries Without Systematic Molecular Epidemiology Programs

por Domínguez, Juan, Acosta, Fermín, Pérez-Lago, Laura, Sambrano, Dilcia, Batista, Victoria, De La Guardia, Carolina, Abascal, Estefanía, Chiner-Oms, Álvaro, Comas, Iñaki, González, Prudencio, Bravo, Jaime, Del Cid, Pedro, Rosas, Samantha, Muñoz, Patricia, Goodridge, Amador, García de Viedma, Darío
Publicado 2019

SARS-CoV-2 Outbreak on a Spanish Mink Farm: Epidemiological, Molecular, and Pathological Studies

por Badiola, Juan José, Otero, Alicia, Sevilla, Eloisa, Marín, Belén, García Martínez, Mirta, Betancor, Marina, Sola, Diego, Pérez Lázaro, Sonia, Lozada, Jenny, Velez, Carolina, Chiner-Oms, Álvaro, Comas, Iñaki, Cancino-Muñoz, Irving, Monleón, Eva, Monzón, Marta, Acín, Cristina, Bolea, Rosa, Moreno, Bernardino
Publicado 2022

Fine-grain population structure and transmission patterns of Mycobacterium tuberculosis in southern Mozambique, a high TB/HIV burden area

por Saavedra Cervera, Belén, López, Mariana G., Chiner-Oms, Álvaro, García, Ana María, Cancino-Muñoz, Irving, Torres-Puente, Manuela, Villamayor, Luis, Madrazo-Moya, Carlos, Mambuque, Edson, Sequera, Guillermo Victor, Respeito, Durval, Blanco, Silvia, Augusto, Orvalho, López-Varela, Elisa, García-Basteiro, Alberto L., Comas, Iñaki
Publicado 2022

Complete Analysis of the Epidemiological Scenario around a SARS-CoV-2 Reinfection: Previous Infection Events and Subsequent Transmission

por Pérez Lago, Laura, Pérez Latorre, Leire, Herranz, Marta, Tejerina, Francisco, Sola-Campoy, Pedro J., Sicilia, Jon, Suárez-González, Julia, Andrés-Zayas, Cristina, Chiner-Oms, Alvaro, Jiménez-Serrano, Santiago, García-González, Neris, Comas, Iñaki, González-Candelas, Fernando, Martínez-Laperche, Carolina, Catalán, Pilar, Muñoz, Patricia, García de Viedma, Darío
Publicado 2021

Screening of inmates transferred to Spain reveals a Peruvian prison as a reservoir of persistent Mycobacterium tuberculosis MDR strains and mixed infections

por Abascal, Estefanía, Herranz, Marta, Acosta, Fermín, Agapito, Juan, Cabibbe, Andrea M., Monteserin, Johana, Ruiz Serrano, María Jesús, Gijón, Paloma, Fernández-González, Francisco, Lozano, Nuria, Chiner-Oms, Álvaro, Cáceres, Tatiana, Pintado, Pilar Gómez, Acín, Enrique, Valencia, Eddy, Muñoz, Patricia, Comas, Iñaki, Cirillo, Daniela M., Ritacco, Viviana, Gotuzzo, Eduardo, García de Viedma, Darío
Publicado 2020

Tracking SARS-CoV-2 introductions in Mozambique using pandemic-scale phylogenies: a retrospective observational study

por Martínez-Martínez, Francisco José, Massinga, Arsenia J, De Jesus, Áuria, Ernesto, Rita M, Cano-Jiménez, Pablo, Chiner-Oms, Álvaro, Gómez-Navarro, Inmaculada, Guillot-Fernández, Marina, Guinovart, Caterina, Sitoe, António, Vubil, Delfino, Bila, Rubão, Gujamo, Rufino, Enosse, Sónia, Jiménez-Serrano, Santiago, Torres-Puente, Manuela, Comas, Iñaki, Mandomando, Inácio, López, Mariana G, Mayor, Alfredo
Publicado 2023