Power analysis and sample size estimation for RNA-Seq differential expression

por Ching, Travers, Huang, Sijia, Garmire, Lana X.
Publicado 2014

Cox-nnet: An artificial neural network method for prognosis prediction of high-throughput omics data

por Ching, Travers, Zhu, Xun, Garmire, Lana X.
Publicado 2018

Using epigenomics data to predict gene expression in lung cancer

por Li, Jeffery, Ching, Travers, Huang, Sijia, Garmire, Lana X
Publicado 2015

Non-coding yet non-trivial: a review on the computational genomics of lincRNAs

por Ching, Travers, Masaki, Jayson, Weirather, Jason, Garmire, Lana X.
Publicado 2015

Single-Cell Transcriptomics Bioinformatics and Computational Challenges

por Poirion, Olivier B., Zhu, Xun, Ching, Travers, Garmire, Lana
Publicado 2016

Using single nucleotide variations in single-cell RNA-seq to identify subpopulations and genotype-phenotype linkage

por Poirion, Olivier, Zhu, Xun, Ching, Travers, Garmire, Lana X.
Publicado 2018

A Novel Model to Combine Clinical and Pathway-Based Transcriptomic Information for the Prognosis Prediction of Breast Cancer

por Huang, Sijia, Yee, Cameron, Ching, Travers, Yu, Herbert, Garmire, Lana X.
Publicado 2014

mirMark: a site-level and UTR-level classifier for miRNA target prediction

por Menor, Mark, Ching, Travers, Zhu, Xun, Garmire, David, Garmire, Lana X
Publicado 2014

Detecting heterogeneity in single-cell RNA-Seq data by non-negative matrix factorization

por Zhu, Xun, Ching, Travers, Pan, Xinghua, Weissman, Sherman M., Garmire, Lana
Publicado 2017

Maternal cardiovascular-related single nucleotide polymorphisms, genes, and pathways associated with early-onset preeclampsia

por Benny, Paula, Yamasato, Kelly, Yunits, Breck, Zhu, Xun, Ching, Travers, Garmire, Lana X., Berry, Marla J., Towner, Dena
Publicado 2019

Genome-scale hypomethylation in the cord blood DNAs associated with early onset preeclampsia

por Ching, Travers, Ha, James, Song, Min-Ae, Tiirikainen, Maarit, Molnar, Janos, Berry, Marla J, Towner, Dena, Garmire, Lana X
Publicado 2015

Pan-Cancer Analyses Reveal Long Intergenic Non-Coding RNAs Relevant to Tumor Diagnosis, Subtyping and Prognosis

por Ching, Travers, Peplowska, Karolina, Huang, Sijia, Zhu, Xun, Shen, Yi, Molnar, Janos, Yu, Herbert, Tiirikainen, Maarit, Fogelgren, Ben, Fan, Rong, Garmire, Lana X.
Publicado 2016

Analysis of Microarray Data on Gene Expression and Methylation to Identify Long Non-coding RNAs in Non-small Cell Lung Cancer

por Feng, Nannan, Ching, Travers, Wang, Yu, Liu, Ben, Lin, Hongyan, Shi, Oumin, Zhang, Xiaohong, Zheng, Min, Zheng, Xin, Gao, Ming, Zheng, Zhi-jie, Yu, Herbert, Garmire, Lana, Qian, Biyun
Publicado 2016

Alternative splicing promotes tumour aggressiveness and drug resistance in African American prostate cancer

por Wang, Bi-Dar, Ceniccola, Kristin, Hwang, SuJin, Andrawis, Ramez, Horvath, Anelia, Freedman, Jennifer A., Olender, Jacqueline, Knapp, Stefan, Ching, Travers, Garmire, Lana, Patel, Vyomesh, Garcia-Blanco, Mariano A., Patierno, Steven R., Lee, Norman H.
Publicado 2017

Corrigendum: Alternative splicing promotes tumour aggressiveness and drug resistance in African American prostate cancer

por Wang, Bi-Dar, Ceniccola, Kristin, Hwang, SuJin, Andrawis, Ramez, Horvath, Anelia, Freedman, Jennifer A., Olender, Jacqueline, Knapp, Stefan, Ching, Travers, Garmire, Lana, Patel, Vyomesh, Garcia-Blanco, Mariano A., Patierno, Steven R., Lee, Norman H.
Publicado 2017

Minimal Residual Disease Dynamics after Venetoclax-Obinutuzumab Treatment: Extended Off-Treatment Follow-up From the Randomized CLL14 Study

por Al-Sawaf, Othman, Zhang, Can, Lu, Tong, Liao, Michael Z., Panchal, Anesh, Robrecht, Sandra, Ching, Travers, Tandon, Maneesh, Fink, Anna-Maria, Tausch, Eugen, Schneider, Christof, Ritgen, Matthias, Böttcher, Sebastian, Kreuzer, Karl-Anton, Chyla, Brenda, Miles, Dale, Wendtner, Clemens-Martin, Eichhorst, Barbara, Stilgenbauer, Stephan, Jiang, Yanwen, Hallek, Michael, Fischer, Kirsten
Publicado 2021

Analytical evaluation of the clonoSEQ Assay for establishing measurable (minimal) residual disease in acute lymphoblastic leukemia, chronic lymphocytic leukemia, and multiple myelo...

por Ching, Travers, Duncan, Megan E., Newman-Eerkes, Tera, McWhorter, Mollie M. E., Tracy, Jeffrey M., Steen, Michelle S., Brown, Ryan P., Venkatasubbarao, Srivatsa, Akers, Nicholas K., Vignali, Marissa, Moorhead, Martin E., Watson, Drew, Emerson, Ryan O., Mann, Tobias P., Cimler, B. Melina, Swatkowski, Pamela L., Kirsch, Ilan R., Sang, Charles, Robins, Harlan S., Howie, Bryan, Sherwood, Anna
Publicado 2020

Multimodal, broadly neutralizing antibodies against SARS-CoV-2 identified by high-throughput native pairing of BCRs from bulk B cells

por Keitany, Gladys J., Rubin, Benjamin E.R., Garrett, Meghan E., Musa, Andrea, Tracy, Jeff, Liang, Yu, Ebert, Peter, Moore, Amanda J., Guan, Jonathan, Eggers, Erica, Lescano, Ninnia, Brown, Ryan, Carbo, Adria, Al-Asadi, Hussein, Ching, Travers, Day, Austin, Harris, Rebecca, Linkem, Charles, Popov, Dimitry, Wilkins, Courtney, Li, Lianqu, Wang, Jiao, Liu, Chuanxin, Chen, Li, Dines, Jennifer N., Atyeo, Caroline, Alter, Galit, Baldo, Lance, Sherwood, Anna, Howie, Bryan, Klinger, Mark, Yusko, Erik, Robins, Harlan S., Benzeno, Sharon, Gilbert, Amy E.
Publicado 2023

Opportunities and obstacles for deep learning in biology and medicine

por Ching, Travers, Himmelstein, Daniel S., Beaulieu-Jones, Brett K., Kalinin, Alexandr A., Do, Brian T., Way, Gregory P., Ferrero, Enrico, Agapow, Paul-Michael, Zietz, Michael, Hoffman, Michael M., Xie, Wei, Rosen, Gail L., Lengerich, Benjamin J., Israeli, Johnny, Lanchantin, Jack, Woloszynek, Stephen, Carpenter, Anne E., Shrikumar, Avanti, Xu, Jinbo, Cofer, Evan M., Lavender, Christopher A., Turaga, Srinivas C., Alexandari, Amr M., Lu, Zhiyong, Harris, David J., DeCaprio, Dave, Qi, Yanjun, Kundaje, Anshul, Peng, Yifan, Wiley, Laura K., Segler, Marwin H. S., Boca, Simina M., Swamidass, S. Joshua, Huang, Austin, Gitter, Anthony, Greene, Casey S.
Publicado 2018