Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization

por Goren, Emily, Wang, Chong, He, Zhulin, Sheflin, Amy M., Chiniquy, Dawn, Prenni, Jessica E., Tringe, Susannah, Schachtman, Daniel P., Liu, Peng
Publicado 2021

Three Novel Rice Genes Closely Related to the Arabidopsis IRX9, IRX9L, and IRX14 Genes and Their Roles in Xylan Biosynthesis

por Chiniquy, Dawn, Varanasi, Patanjali, Oh, Taeyun, Harholt, Jesper, Katnelson, Jacob, Singh, Seema, Auer, Manfred, Simmons, Blake, Adams, Paul D., Scheller, Henrik V., Ronald, Pamela C.
Publicado 2013

Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes

por Chiniquy, Dawn, Barnes, Elle M., Zhou, Jinglie, Hartman, Kyle, Li, Xiaohui, Sheflin, Amy, Pella, Allyn, Marsh, Ellen, Prenni, Jessica, Deutschbauer, Adam M., Schachtman, Daniel P., Tringe, Susannah G.
Publicado 2021

Microfabrication of a Chamber for High-Resolution, In Situ Imaging of the Whole Root for Plant–Microbe Interactions

por Jabusch, Lauren K., Kim, Peter W., Chiniquy, Dawn, Zhao, Zhiying, Wang, Bing, Bowen, Benjamin, Kang, Ashley J., Yoshikuni, Yasuo, Deutschbauer, Adam M., Singh, Anup K., Northen, Trent R.
Publicado 2021

Metabolomics of sorghum roots during nitrogen stress reveals compromised metabolic capacity for salicylic acid biosynthesis

por Sheflin, Amy M., Chiniquy, Dawn, Yuan, Chaohui, Goren, Emily, Kumar, Indrajit, Braud, Max, Brutnell, Thomas, Eveland, Andrea L., Tringe, Susannah, Liu, Peng, Kresovich, Stephen, Marsh, Ellen L., Schachtman, Daniel P., Prenni, Jessica E.
Publicado 2019

Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics

por Xu, Ling, Dong, Zhaobin, Chiniquy, Dawn, Pierroz, Grady, Deng, Siwen, Gao, Cheng, Diamond, Spencer, Simmons, Tuesday, Wipf, Heidi M.-L., Caddell, Daniel, Varoquaux, Nelle, Madera, Mary A., Hutmacher, Robert, Deutschbauer, Adam, Dahlberg, Jeffery A., Guerinot, Mary Lou, Purdom, Elizabeth, Banfield, Jillian F., Taylor, John W., Lemaux, Peggy G., Coleman-Derr, Devin
Publicado 2021