A bivariate zero-inflated negative binomial model and its applications to biomedical settings

by Cho, Hunyong, Liu, Chuwen, Preisser, John S, Wu, Di
Published 2023

Model selection for survival individualized treatment rules using the jackknife estimator

by Honvoh, Gilson D., Cho, Hunyong, Kosorok, Michael R.
Published 2022

BZINB model-based pathway analysis and module identification facilitates integration of microbiome and metabolome data

by Lin, Bridget, Cho, Hunyong, Liu, Chuwen, Roach, Jeff, Ribeiro, Apoena Aguiar, Divaris, Kimon, Wu, Di
Published 2023

BZINB Model-Based Pathway Analysis and Module Identification Facilitates Integration of Microbiome and Metabolome Data

by Lin, Bridget M., Cho, Hunyong, Liu, Chuwen, Roach, Jeff, Ribeiro, Apoena Aguiar, Divaris, Kimon, Wu, Di
Published 2023

Improved Metabolite Prediction Using Microbiome Data-Based Elastic Net Models

by Xie, Jialiu, Cho, Hunyong, Lin, Bridget M., Pillai, Malvika, Heimisdottir, Lara H., Bandyopadhyay, Dipankar, Zou, Fei, Roach, Jeffrey, Divaris, Kimon, Wu, Di
Published 2021

Comprehensive evaluation of methods for differential expression analysis of metatranscriptomics data

by Cho, Hunyong, Qu, Yixiang, Liu, Chuwen, Tang, Boyang, Lyu, Ruiqi, Lin, Bridget M, Roach, Jeffrey, Azcarate-Peril, M Andrea, Aguiar Ribeiro, Apoena, Love, Michael I, Divaris, Kimon, Wu, Di
Published 2023

Selenomonas sputigena acts as a pathobiont mediating spatial structure and biofilm virulence in early childhood caries

by Cho, Hunyong, Ren, Zhi, Divaris, Kimon, Roach, Jeffrey, Lin, Bridget M., Liu, Chuwen, Azcarate-Peril, M. Andrea, Simancas-Pallares, Miguel A., Shrestha, Poojan, Orlenko, Alena, Ginnis, Jeannie, North, Kari E., Zandona, Andrea G. Ferreira, Ribeiro, Apoena Aguiar, Wu, Di, Koo, Hyun
Published 2023

The bacterial microbiome and metabolome in caries progression and arrest

by da Costa Rosa, Thamirys, de Almeida Neves, Aline, Azcarate-Peril, M. Andrea, Divaris, Kimon, Wu, Di, Cho, Hunyong, Moss, Kevin, Paster, Bruce J., Chen, Tsute, B. Freitas-Fernandes, Liana, Fidalgo, Tatiana K. S., Tadeu Lopes, Ricardo, Valente, Ana Paula, R. Arnold, Roland, de Aguiar Ribeiro, Apoena
Published 2021

Cohort Profile: ZOE 2.0—A Community-Based Genetic Epidemiologic Study of Early Childhood Oral Health

by Divaris, Kimon, Slade, Gary D., Ferreira Zandona, Andrea G., Preisser, John S., Ginnis, Jeannie, Simancas-Pallares, Miguel A., Agler, Cary S., Shrestha, Poojan, Karhade, Deepti S., Ribeiro, Apoena de Aguiar, Cho, Hunyong, Gu, Yu, Meyer, Beau D., Joshi, Ashwini R., Azcarate-Peril, M. Andrea, Basta, Patricia V., Wu, Di, North, Kari E.
Published 2020