Non-invasive prognostic protein biomarker signatures associated with colorectal cancer

por Surinova, Silvia, Radová, Lenka, Choi, Meena, Srovnal, Josef, Brenner, Hermann, Vitek, Olga, Hajdúch, Marián, Aebersold, Ruedi
Publicado 2015

MSstatsTMT: Statistical Detection of Differentially Abundant Proteins in Experiments with Isobaric Labeling and Multiple Mixtures

por Huang, Ting, Choi, Meena, Tzouros, Manuel, Golling, Sabrina, Pandya, Nikhil Janak, Banfai, Balazs, Dunkley, Tom, Vitek, Olga
Publicado 2020

MSstatsPTM: Statistical Relative Quantification of Posttranslational Modifications in Bottom-Up Mass Spectrometry-Based Proteomics

por Kohler, Devon, Tsai, Tsung-Heng, Verschueren, Erik, Huang, Ting, Hinkle, Trent, Phu, Lilian, Choi, Meena, Vitek, Olga
Publicado 2022

Identification of a seven glycopeptide signature for malignant pleural mesothelioma in human serum by selected reaction monitoring

por Cerciello, Ferdinando, Choi, Meena, Nicastri, Annalisa, Bausch-Fluck, Damaris, Ziegler, Annemarie, Vitek, Olga, Felley-Bosco, Emanuela, Stahel, Rolf, Aebersold, Ruedi, Wollscheid, Bernd
Publicado 2013

MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale

por Kohler, Devon, Staniak, Mateusz, Tsai, Tsung-Heng, Huang, Ting, Shulman, Nicholas, Bernhardt, Oliver M., MacLean, Brendan X., Nesvizhskii, Alexey I., Reiter, Lukas, Sabido, Eduard, Choi, Meena, Vitek, Olga
Publicado 2023

Genetic inactivation of RIP1 kinase activity in rats protects against ischemic brain injury

por Stark, Kimberly, Goncharov, Tatiana, Varfolomeev, Eugene, Xie, Luke, Ngu, Hai, Peng, Ivan, Anderson, Keith R., Verschueren, Erik, Choi, Meena, Kirkpatrick, Donald S., Easton, Amy, Webster, Joshua D., McKenzie, Brent S., Vucic, Domagoj, Bingol, Baris
Publicado 2021

Prediction of colorectal cancer diagnosis based on circulating plasma proteins

por Surinova, Silvia, Choi, Meena, Tao, Sha, Schüffler, Peter J, Chang, Ching-Yun, Clough, Timothy, Vysloužil, Kamil, Khoylou, Marta, Srovnal, Josef, Liu, Yansheng, Matondo, Mariette, Hüttenhain, Ruth, Weisser, Hendrik, Buhmann, Joachim M, Hajdúch, Marián, Brenner, Hermann, Vitek, Olga, Aebersold, Ruedi
Publicado 2015

Precise Temporal Profiling of Signaling Complexes in Primary Cells Using SWATH Mass Spectrometry

por Caron, Etienne, Roncagalli, Romain, Hase, Takeshi, Wolski, Witold E., Choi, Meena, Menoita, Marisa G., Durand, Stephane, García-Blesa, Antonio, Fierro-Monti, Ivo, Sajic, Tatjana, Heusel, Moritz, Weiss, Tobias, Malissen, Marie, Schlapbach, Ralph, Collins, Ben C., Ghosh, Samik, Kitano, Hiroaki, Aebersold, Ruedi, Malissen, Bernard, Gstaiger, Matthias
Publicado 2017

TEAD Proteins Associate With DNA Repair Proteins to Facilitate Cellular Recovery From DNA Damage

por Calses, Philamer C., Pham, Victoria C., Guarnaccia, Alissa D., Choi, Meena, Verschueren, Erik, Bakker, Sietske T., Pham, Trang H., Hinkle, Trent, Liu, Chad, Chang, Matthew T., Kljavin, Noelyn, Bakalarski, Corey, Haley, Benjamin, Zou, Jianing, Yan, Cuicui, Song, Xia, Lin, Xiaoyan, Rowntree, Rebecca, Ashworth, Alan, Dey, Anwesha, Lill, Jennie R.
Publicado 2023

Multiplexed proteomics of autophagy-deficient murine macrophages reveals enhanced antimicrobial immunity via the oxidative stress response

por Maculins, Timurs, Verschueren, Erik, Hinkle, Trent, Choi, Meena, Chang, Patrick, Chalouni, Cecile, Rao, Shilpa, Kwon, Youngsu, Lim, Junghyun, Katakam, Anand Kumar, Kunz, Ryan C, Erickson, Brian K, Huang, Ting, Tsai, Tsung-Heng, Vitek, Olga, Reichelt, Mike, Senbabaoglu, Yasin, Mckenzie, Brent, Rohde, John R, Dikic, Ivan, Kirkpatrick, Donald S, Murthy, Aditya
Publicado 2021

MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets

por Choi, Meena, Carver, Jeremy, Chiva, Cristina, Tzouros, Manuel, Huang, Ting, Tsai, Tsung-Heng, Pullman, Benjamin, Bernhardt, Oliver M., Hüttenhain, Ruth, Teo, Guo Ci, Perez-Riverol, Yasset, Muntel, Jan, Müller, Maik, Goetze, Sandra, Pavlou, Maria, Verschueren, Erik, Wollscheid, Bernd, Nesvizhskii, Alexey I., Reiter, Lukas, Dunkley, Tom, Sabidó, Eduard, Bandeira, Nuno, Vitek, Olga
Publicado 2020

A proteomics sample metadata representation for multiomics integration and big data analysis

por Dai, Chengxin, Füllgrabe, Anja, Pfeuffer, Julianus, Solovyeva, Elizaveta M., Deng, Jingwen, Moreno, Pablo, Kamatchinathan, Selvakumar, Kundu, Deepti Jaiswal, George, Nancy, Fexova, Silvie, Grüning, Björn, Föll, Melanie Christine, Griss, Johannes, Vaudel, Marc, Audain, Enrique, Locard-Paulet, Marie, Turewicz, Michael, Eisenacher, Martin, Uszkoreit, Julian, Van Den Bossche, Tim, Schwämmle, Veit, Webel, Henry, Schulze, Stefan, Bouyssié, David, Jayaram, Savita, Duggineni, Vinay Kumar, Samaras, Patroklos, Wilhelm, Mathias, Choi, Meena, Wang, Mingxun, Kohlbacher, Oliver, Brazma, Alvis, Papatheodorou, Irene, Bandeira, Nuno, Deutsch, Eric W., Vizcaíno, Juan Antonio, Bai, Mingze, Sachsenberg, Timo, Levitsky, Lev I., Perez-Riverol, Yasset
Publicado 2021

Antibody targeting of E3 ubiquitin ligases for receptor degradation

por Marei, Hadir, Tsai, Wen-Ting K., Kee, Yee-Seir, Ruiz, Karen, He, Jieyan, Cox, Chris, Sun, Tao, Penikalapati, Sai, Dwivedi, Pankaj, Choi, Meena, Kan, David, Saenz-Lopez, Pablo, Dorighi, Kristel, Zhang, Pamela, Kschonsak, Yvonne T., Kljavin, Noelyn, Amin, Dhara, Kim, Ingrid, Mancini, Andrew G., Nguyen, Thao, Wang, Chunling, Janezic, Eric, Doan, Alexander, Mai, Elaine, Xi, Hongkang, Gu, Chen, Heinlein, Melanie, Biehs, Brian, Wu, Jia, Lehoux, Isabelle, Harris, Seth, Comps-Agrar, Laetitia, Seshasayee, Dhaya, de Sauvage, Frederic J., Grimmer, Matthew, Li, Jing, Agard, Nicholas J., de Sousa e Melo, Felipe
Publicado 2022