Agricultural Freshwater Pond Supports Diverse and Dynamic Bacterial and Viral Populations

por Chopyk, Jessica, Allard, Sarah, Nasko, Daniel J., Bui, Anthony, Mongodin, Emmanuel F., Sapkota, Amy R.
Publicado 2018

Bacteriophage-Mediated Perturbation of Defined Bacterial Communities in an In Vitro Model of the Human Gut

por Attai, Hedieh, Wilde, Jacob, Liu, Roland, Chopyk, Jessica, Garcia, Andrew G., Allen-Vercoe, Emma, Pride, David
Publicado 2022

Family A DNA Polymerase Phylogeny Uncovers Diversity and Replication Gene Organization in the Virioplankton

por Nasko, Daniel J., Chopyk, Jessica, Sakowski, Eric G., Ferrell, Barbra D., Polson, Shawn W., Wommack, K. Eric
Publicado 2018

Aseptic Barriers Allow a Clean Contact for Contaminated Stethoscope Diaphragms

por Vasudevan, Rajiv, Shin, Ji H., Chopyk, Jessica, Peacock, William F., Torriani, Francesca J., Maisel, Alan S., Pride, David T.
Publicado 2020

Seasonal dynamics in taxonomy and function within bacterial and viral metagenomic assemblages recovered from a freshwater agricultural pond

por Chopyk, Jessica, Nasko, Daniel J., Allard, Sarah, Bui, Anthony, Pop, Mihai, Mongodin, Emmanuel F., Sapkota, Amy R.
Publicado 2020

Fecal Viral Community Responses to High-Fat Diet in Mice

por Schulfer, Anjelique, Santiago-Rodriguez, Tasha M., Ly, Melissa, Borin, Joshua M., Chopyk, Jessica, Blaser, Martin J., Pride, David T.
Publicado 2020

Zero-valent iron sand filtration reduces concentrations of virus-like particles and modifies virome community composition in reclaimed water used for agricultural irrigation

por Chopyk, Jessica, Kulkarni, Prachi, Nasko, Daniel J., Bradshaw, Rhodel, Kniel, Kalmia E., Chiu, Pei, Sharma, Manan, Sapkota, Amy R.
Publicado 2019

Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome

por Jung, Carrie E., Chopyk, Jessica, Shin, Ji Hyun, Lukacz, Emily S., Brubaker, Linda, Schwanemann, Leila K., Knight, Rob, Wolfe, Alan J., Pride, David T.
Publicado 2019

Compositional Differences in the Oral Microbiome of E-cigarette Users

por Chopyk, Jessica, Bojanowski, Christine M., Shin, John, Moshensky, Alex, Fuentes, Ana Lucia, Bonde, Saniya S., Chuki, Dagni, Pride, David T., Crotty Alexander, Laura E.
Publicado 2021

The Virome of Cerebrospinal Fluid: Viruses Where We Once Thought There Were None

por Ghose, Chandrabali, Ly, Melissa, Schwanemann, Leila K., Shin, Ji Hyun, Atab, Katayoon, Barr, Jeremy J., Little, Mark, Schooley, Robert T., Chopyk, Jessica, Pride, David T.
Publicado 2019

Characterization of SARS-CoV-2 Distribution and Microbial Succession in a Clinical Microbiology Testing Facility during the SARS-CoV-2 Pandemic

por Sah, Govind Prasad, Kovalick, Grace, Chopyk, Jessica, Kuo, Peiting, Huang, Lina, Ghatbale, Pooja, Das, Promi, Realegeno, Susan, Knight, Rob, Gilbert, Jack A., Pride, David T.
Publicado 2023

Presence of pathogenic Escherichia coli is correlated with bacterial community diversity and composition on pre-harvest cattle hides

por Chopyk, Jessica, Moore, Ryan M., DiSpirito, Zachary, Stromberg, Zachary R., Lewis, Gentry L., Renter, David G., Cernicchiaro, Natalia, Moxley, Rodney A., Wommack, K. Eric
Publicado 2016

The Bacterial Communities of Little Cigars and Cigarillos Are Dynamic Over Time and Varying Storage Conditions

por Smyth, Eoghan M., Chattopadhyay, Suhana, Babik, Kelsey, Reid, Molly, Chopyk, Jessica, Malayil, Leena, Kulkarni, Prachi, Hittle, Lauren E., Clark, Pamela I., Sapkota, Amy R., Mongodin, Emmanuel F.
Publicado 2019

Fecal virome transplantation is sufficient to alter fecal microbiota and drive lean and obese body phenotypes in mice

por Borin, Joshua M., Liu, Roland, Wang, Yanhan, Wu, Tsung-Chin, Chopyk, Jessica, Huang, Lina, Kuo, Peiting, Ghose, Chandrabali, Meyer, Justin R., Tu, Xin M., Schnabl, Bernd, Pride, David T.
Publicado 2023

Temporal Variations in Cigarette Tobacco Bacterial Community Composition and Tobacco-Specific Nitrosamine Content Are Influenced by Brand and Storage Conditions

por Chopyk, Jessica, Chattopadhyay, Suhana, Kulkarni, Prachi, Smyth, Eoghan M., Hittle, Lauren E., Paulson, Joseph N., Pop, Mihai, Buehler, Stephanie S., Clark, Pamela I., Mongodin, Emmanuel F., Sapkota, Amy R.
Publicado 2017

Fecal virome transplantation is sufficient to alter fecal microbiota and drive lean and obese body phenotypes in mice

por Borin, Joshua M., Liu, Roland, Wang, Yanhan, Wu, Tsung-Chin, Chopyk, Jessica, Huang, Lina, Kuo, Peiting, Ghose, Chandrabali, Meyer, Justin R., Tu, Xin M., Schnabl, Bernd, Pride, David T.
Publicado 2023

Temporal variations in bacterial community diversity and composition throughout intensive care unit renovations

por Chopyk, Jessica, Akrami, Kevan, Bavly, Tovia, Shin, Ji H., Schwanemann, Leila K., Ly, Melissa, Kalia, Richa, Xu, Ying, Kelley, Scott T., Malhotra, Atul, Torriani, Francesca J., Sweeney, Daniel A., Pride, David T.
Publicado 2020

Common antibiotics, azithromycin and amoxicillin, affect gut metagenomics within a household

por Chopyk, Jessica, Cobián Güemes, Ana Georgina, Ramirez-Sanchez, Claudia, Attai, Hedieh, Ly, Melissa, Jones, Marcus B., Liu, Roland, Liu, Chenyu, Yang, Kun, Tu, Xin M., Abeles, Shira R., Nelson, Karen, Pride, David T.
Publicado 2023

Mentholation affects the cigarette microbiota by selecting for bacteria resistant to harsh environmental conditions and selecting against potential bacterial pathogens

por Chopyk, Jessica, Chattopadhyay, Suhana, Kulkarni, Prachi, Claye, Emma, Babik, Kelsey R., Reid, Molly C., Smyth, Eoghan M., Hittle, Lauren E., Paulson, Joseph N., Cruz-Cano, Raul, Pop, Mihai, Buehler, Stephanie S., Clark, Pamela I., Sapkota, Amy R., Mongodin, Emmanuel F.
Publicado 2017

Current State of and Future Opportunities for Prediction in Microbiome Research: Report from the Mid-Atlantic Microbiome Meet-up in Baltimore on 9 January 2019

por Sakowski, Eric, Uritskiy, Gherman, Cooper, Rachel, Gomes, Maya, McLaren, Michael R., Meisel, Jacquelyn S., Mickol, Rebecca L., Mintz, C. David, Mongodin, Emmanuel F., Pop, Mihai, Rahman, Mohammad Arifur, Sanchez, Alvaro, Timp, Winston, Vela, Jeseth Delgado, Wolz, Carly Muletz, Zackular, Joseph P., Chopyk, Jessica, Commichaux, Seth, Davis, Meghan, Dluzen, Douglas, Ganesan, Sukirth M., Haruna, Muyideen, Nasko, Dan, Regan, Mary J., Sarria, Saul, Shah, Nidhi, Stacy, Brook, Taylor, Dylan, DiRuggiero, Jocelyne, Preheim, Sarah P.
Publicado 2019