Deep Mutational Scanning Reveals the Structural Basis for α-Synuclein Activity

por Newberry, Robert W., Leong, Jaime T., Chow, Eric D., Kampmann, Martin, DeGrado, William F.
Publicado 2020

Miniaturization and optimization of 384-well compatible RNA sequencing library preparation

por Mayday, Madeline Y., Khan, Lillian M., Chow, Eric D., Zinter, Matt S., DeRisi, Joseph L.
Publicado 2019

D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response

por Jiang, Jialong, Chen, Sisi, Tsou, Tiffany, McGinnis, Christopher S., Khazaei, Tahmineh, Zhu, Qin, Park, Jong H., Strazhnik, Inna-Marie, Hanna, John, Chow, Eric D., Sivak, David A., Gartner, Zev J., Thomson, Matt
Publicado 2023

Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens

por Doan, Thuy, Wilson, Michael R., Crawford, Emily D., Chow, Eric D., Khan, Lillian M., Knopp, Kristeene A., O’Donovan, Brian D., Xia, Dongxiang, Hacker, Jill K., Stewart, Jay M., Gonzales, John A., Acharya, Nisha R., DeRisi, Joseph L.
Publicado 2016

Erratum to: Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens

por Doan, Thuy, Wilson, Michael R., Crawford, Emily D., Chow, Eric D., Khan, Lillian M., Knopp, Kristeene A., O’Donovan, Brian D., Xia, Dongxiang, Hacker, Jill K., Stewart, Jay M., Gonzales, John A., Acharya, Nisha R., DeRisi, Joseph L.
Publicado 2016

Selection of Macrolide and Non-Macrolide Resistance with Mass Azithromycin Distribution: A Community-Randomized Trial

por Doan, Thuy, Worden, Lee, Hinterwirth, Armin, Arzika, Ahmed M., Maliki, Ramatou, Abdou, Amza, Zhong, Lina, Chen, Cindi, Cook, Catherine, Lebas, Elodie, O’Brien, Kieran S., Oldenburg, Catherine E., Chow, Eric D., Porco, Travis C., Lipsitch, Marc, Keenan, Jeremy D., Lietman, Thomas M.
Publicado 2020

Mass Azithromycin Distribution and Community Microbiome: A Cluster-Randomized Trial

por Doan, Thuy, Hinterwirth, Armin, Arzika, Ahmed M, Cotter, Sun Y, Ray, Kathryn J, O’Brien, Kieran S, Zhong, Lina, Chow, Eric D, Zhou, Zhaoxia, Cummings, Susie L, Fry, Dionna, Oldenburg, Catherine E, Worden, Lee, Porco, Travis C, Keenan, Jeremy D, Lietman, Thomas M
Publicado 2018

XYZeq: Spatially resolved single-cell RNA sequencing reveals expression heterogeneity in the tumor microenvironment

por Lee, Youjin, Bogdanoff, Derek, Wang, Yutong, Hartoularos, George C., Woo, Jonathan M., Mowery, Cody T., Nisonoff, Hunter M., Lee, David S., Sun, Yang, Lee, James, Mehdizadeh, Sadaf, Cantlon, Joshua, Shifrut, Eric, Ngyuen, David N., Roth, Theodore L., Song, Yun S., Marson, Alexander, Chow, Eric D., Ye, Chun Jimmie
Publicado 2021

UDP-galactose and Acetyl-CoA transporters as Plasmodium multidrug resistance genes

por Lim, Michelle Yi-Xiu, LaMonte, Gregory, Lee, Marcus C.S., Reimer, Christin, Tan, Bee Huat, Corey, Victoria, Tjahjadi, Bianca F., Chua, Adeline, Nachon, Marie, Wintjens, René, Gedeck, Peter, Malleret, Benoit, Renia, Laurent, Bonamy, Ghislain M.C., Ho, Paul Chi-Lui, Yeung, Bryan K. S., Chow, Eric D., Lim, Liting, Fidock, David A., Diagana, Thierry T., Winzeler, Elizabeth A., Bifani, Pablo
Publicado 2016

Pulmonary Metagenomic Sequencing Suggests Missed Infections in Immunocompromised Children

por Zinter, Matt S, Dvorak, Christopher C, Mayday, Madeline Y, Iwanaga, Kensho, Ly, Ngoc P, McGarry, Meghan E, Church, Gwynne D, Faricy, Lauren E, Rowan, Courtney M, Hume, Janet R, Steiner, Marie E, Crawford, Emily D, Langelier, Charles, Kalantar, Katrina, Chow, Eric D, Miller, Steve, Shimano, Kristen, Melton, Alexis, Yanik, Gregory A, Sapru, Anil, DeRisi, Joseph L
Publicado 2019

Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults

por Langelier, Charles, Kalantar, Katrina L., Moazed, Farzad, Wilson, Michael R., Crawford, Emily D., Deiss, Thomas, Belzer, Annika, Bolourchi, Samaneh, Caldera, Saharai, Fung, Monica, Jauregui, Alejandra, Malcolm, Katherine, Lyden, Amy, Khan, Lillian, Vessel, Kathryn, Quan, Jenai, Zinter, Matt, Chiu, Charles Y., Chow, Eric D., Wilson, Jenny, Miller, Steve, Matthay, Michael A., Pollard, Katherine S., Christenson, Stephanie, Calfee, Carolyn S., DeRisi, Joseph L.
Publicado 2018

FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences

por Quan, Jenai, Langelier, Charles, Kuchta, Alison, Batson, Joshua, Teyssier, Noam, Lyden, Amy, Caldera, Saharai, McGeever, Aaron, Dimitrov, Boris, King, Ryan, Wilheim, Jordan, Murphy, Maxwell, Ares, Lara Pesce, Travisano, Katherine A, Sit, Rene, Amato, Roberto, Mumbengegwi, Davis R, Smith, Jennifer L, Bennett, Adam, Gosling, Roly, Mourani, Peter M, Calfee, Carolyn S, Neff, Norma F, Chow, Eric D, Kim, Peter S, Greenhouse, Bryan, DeRisi, Joseph L, Crawford, Emily D
Publicado 2019

Estimation of secondary household attack rates for emergent SARS-CoV-2 variants detected by genomic surveillance at a community-based testing site in San Francisco

por Peng, James, Mann, Sabrina A, Mitchell, Anthea M, Liu, Jamin, Laurie, Matthew T., Sunshine, Sara, Pilarowski, Genay, Ayscue, Patrick, Kistler, Amy, Vanaerschot, Manu, Li, Lucy M., McGeever, Aaron, Chow, Eric D., Team, IDseq, Marquez, Carina, Nakamura, Robert, Rubio, Luis, Chamie, Gabriel, Jones, Diane, Jacobo, Jon, Rojas, Susana, Rojas, Susy, Tulier-Laiwa, Valerie, Black, Douglas, Martinez, Jackie, Naso, Jamie, Schwab, Joshua, Petersen, Maya, Havlir, Diane, DeRisi, Joseph
Publicado 2021

Estimation of Secondary Household Attack Rates for Emergent Spike L452R Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants Detected by Genomic Surveillance at a...

por Peng, James, Liu, Jamin, Mann, Sabrina A, Mitchell, Anthea M, Laurie, Matthew T, Sunshine, Sara, Pilarowski, Genay, Ayscue, Patrick, Kistler, Amy, Vanaerschot, Manu, Li, Lucy M, McGeever, Aaron, Chow, Eric D, Marquez, Carina, Nakamura, Robert, Rubio, Luis, Chamie, Gabriel, Jones, Diane, Jacobo, Jon, Rojas, Susana, Rojas, Susy, Tulier-Laiwa, Valerie, Black, Douglas, Martinez, Jackie, Naso, Jamie, Schwab, Joshua, Petersen, Maya, Havlir, Diane, DeRisi, Joseph
Publicado 2021

Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting

por Mavor, David, Barlow, Kyle, Thompson, Samuel, Barad, Benjamin A, Bonny, Alain R, Cario, Clinton L, Gaskins, Garrett, Liu, Zairan, Deming, Laura, Axen, Seth D, Caceres, Elena, Chen, Weilin, Cuesta, Adolfo, Gate, Rachel E, Green, Evan M, Hulce, Kaitlin R, Ji, Weiyue, Kenner, Lillian R, Mensa, Bruk, Morinishi, Leanna S, Moss, Steven M, Mravic, Marco, Muir, Ryan K, Niekamp, Stefan, Nnadi, Chimno I, Palovcak, Eugene, Poss, Erin M, Ross, Tyler D, Salcedo, Eugenia C, See, Stephanie K, Subramaniam, Meena, Wong, Allison W, Li, Jennifer, Thorn, Kurt S, Conchúir, Shane Ó, Roscoe, Benjamin P, Chow, Eric D, DeRisi, Joseph L, Kortemme, Tanja, Bolon, Daniel N, Fraser, James S
Publicado 2016

Extending chemical perturbations of the ubiquitin fitness landscape in a classroom setting reveals new constraints on sequence tolerance

por Mavor, David, Barlow, Kyle A., Asarnow, Daniel, Birman, Yuliya, Britain, Derek, Chen, Weilin, Green, Evan M., Kenner, Lillian R., Mensa, Bruk, Morinishi, Leanna S., Nelson, Charlotte A., Poss, Erin M., Suresh, Pooja, Tian, Ruilin, Arhar, Taylor, Ary, Beatrice E., Bauer, David P., Bergman, Ian D., Brunetti, Rachel M., Chio, Cynthia M., Dai, Shizhong A., Dickinson, Miles S., Elledge, Susanna K., Helsell, Cole V. M., Hendel, Nathan L., Kang, Emily, Kern, Nadja, Khoroshkin, Matvei S., Kirkemo, Lisa L., Lewis, Greyson R., Lou, Kevin, Marin, Wesley M., Maxwell, Alison M., McTigue, Peter F., Myers-Turnbull, Douglas, Nagy, Tamas L., Natale, Andrew M., Oltion, Keely, Pourmal, Sergei, Reder, Gabriel K., Rettko, Nicholas J., Rohweder, Peter J., Schwarz, Daniel M. C, Tan, Sophia K., Thomas, Paul V., Tibble, Ryan W., Town, Jason P., Tsai, Mary K., Ugur, Fatima S., Wassarman, Douglas R., Wolff, Alexander M., Wu, Taia S., Bogdanoff, Derek, Li, Jennifer, Thorn, Kurt S., O'Conchúir, Shane, Swaney, Danielle L., Chow, Eric D., Madhani, Hiten D., Redding, Sy, Bolon, Daniel N., Kortemme, Tanja, DeRisi, Joseph L., Kampmann, Martin, Fraser, James S.
Publicado 2018

Rapid deployment of SARS-CoV-2 testing: The CLIAHUB

por Crawford, Emily D., Acosta, Irene, Ahyong, Vida, Anderson, Erika C., Arevalo, Shaun, Asarnow, Daniel, Axelrod, Shannon, Ayscue, Patrick, Azimi, Camillia S., Azumaya, Caleigh M., Bachl, Stefanie, Bachmutsky, Iris, Bhaduri, Aparna, Brown, Jeremy Bancroft, Batson, Joshua, Behnert, Astrid, Boileau, Ryan M., Bollam, Saumya R., Bonny, Alain R., Booth, David, Borja, Michael Jerico B., Brown, David, Buie, Bryan, Burnett, Cassandra E., Byrnes, Lauren E., Cabral, Katelyn A., Cabrera, Joana P., Caldera, Saharai, Canales, Gabriela, Castañeda, Gloria R., Chan, Agnes Protacio, Chang, Christopher R., Charles-Orszag, Arthur, Cheung, Carly, Chio, Unseng, Chow, Eric D., Citron, Y. Rose, Cohen, Allison, Cohn, Lillian B., Chiu, Charles, Cole, Mitchel A., Conrad, Daniel N., Constantino, Angela, Cote, Andrew, Crayton-Hall, Tre’Jon, Darmanis, Spyros, Detweiler, Angela M., Dial, Rebekah L., Dong, Shen, Duarte, Elias M., Dynerman, David, Egger, Rebecca, Fanton, Alison, Frumm, Stacey M., Fu, Becky Xu Hua, Garcia, Valentina E., Garcia, Julie, Gladkova, Christina, Goldman, Miriam, Gomez-Sjoberg, Rafael, Gordon, M. Grace, Grove, James C. R., Gupta, Shweta, Haddjeri-Hopkins, Alexis, Hadley, Pierce, Haliburton, John, Hao, Samantha L., Hartoularos, George, Herrera, Nadia, Hilberg, Melissa, Ho, Kit Ying E., Hoppe, Nicholas, Hosseinzadeh, Shayan, Howard, Conor J., Hussmann, Jeffrey A., Hwang, Elizabeth, Ingebrigtsen, Danielle, Jackson, Julia R., Jowhar, Ziad M., Kain, Danielle, Kim, James Y. S., Kistler, Amy, Kreutzfeld, Oriana, Kulsuptrakul, Jessie, Kung, Andrew F., Langelier, Charles, Laurie, Matthew T., Lee, Lena, Leng, Kun, Leon, Kristoffer E., Leonetti, Manuel D., Levan, Sophia R., Li, Sam, Li, Aileen W., Liu, Jamin, Lubin, Heidi S., Lyden, Amy, Mann, Jennifer, Mann, Sabrina, Margulis, Gorica, Marquez, Diana M., Marsh, Bryan P., Martyn, Calla, McCarthy, Elizabeth E., McGeever, Aaron, Merriman, Alexander F., Meyer, Lauren K., Miller, Steve, Moore, Megan K., Mowery, Cody T., Mukhtar, Tanzila, Mwakibete, Lusajo L., Narez, Noelle, Neff, Norma F., Osso, Lindsay A., Oviedo, Diter, Peng, Suping, Phelps, Maira, Phong, Kiet, Picard, Peter, Pieper, Lindsey M., Pincha, Neha, Pisco, Angela Oliveira, Pogson, Angela, Pourmal, Sergei, Puccinelli, Robert R., Puschnik, Andreas S., Rackaityte, Elze, Raghavan, Preethi, Raghavan, Madhura, Reese, James, Replogle, Joseph M., Retallack, Hanna, Reyes, Helen, Rose, Donald, Rosenberg, Marci F., Sanchez-Guerrero, Estella, Sattler, Sydney M., Savy, Laura, See, Stephanie K., Sellers, Kristin K., Serpa, Paula Hayakawa, Sheehy, Maureen, Sheu, Jonathan, Silas, Sukrit, Streithorst, Jessica A., Strickland, Jack, Stryke, Doug, Sunshine, Sara, Suslow, Peter, Sutanto, Renaldo, Tamura, Serena, Tan, Michelle, Tan, Jiongyi, Tang, Alice, Tato, Cristina M., Taylor, Jack C., Tenvooren, Iliana, Thompson, Erin M., Thornborrow, Edward C., Tse, Eric, Tung, Tony, Turner, Marc L., Turner, Victoria S., Turnham, Rigney E., Turocy, Mary J., Vaidyanathan, Trisha V., Vainchtein, Ilia D., Vanaerschot, Manu, Vazquez, Sara E., Wandler, Anica M., Wapniarski, Anne, Webber, James T., Weinberg, Zara Y., Westbrook, Alexandra, Wong, Allison W., Wong, Emily, Worthington, Gajus, Xie, Fang, Xu, Albert, Yamamoto, Terrina, Yang, Ying, Yarza, Fauna, Zaltsman, Yefim, Zheng, Tina, DeRisi, Joseph L.
Publicado 2020