Investigation of Inflammation and Tissue Patterning in the Gut Using a Spatially Explicit General-Purpose Model of Enteric Tissue (SEGMEnT)

por Cockrell, Chase, Christley, Scott, An, Gary
Publicado 2014

Computational Studies of the Intestinal Host-Microbiota Interactome

por Christley, Scott, Cockrell, Chase, An, Gary
Publicado 2015

Incorporating Existing Network Information into Gene Network Inference

por Christley, Scott, Nie, Qing, Xie, Xiaohui
Publicado 2009

Dynamic kernel matching for non-conforming data: A case study of T cell receptor datasets

por Ostmeyer, Jared, Cowell, Lindsay, Christley, Scott
Publicado 2023

Patterns of Mesenchymal Condensation in a Multiscale, Discrete Stochastic Model

por Christley, Scott, Alber, Mark S, Newman, Stuart A
Publicado 2007

Multiple organism algorithm for finding ultraconserved elements

por Christley, Scott, Lobo, Neil F, Madey, Greg
Publicado 2008

Parameter inference for discretely observed stochastic kinetic models using stochastic gradient descent

por Wang, Yuanfeng, Christley, Scott, Mjolsness, Eric, Xie, Xiaohui
Publicado 2010

Integrative multicellular biological modeling: a case study of 3D epidermal development using GPU algorithms

por Christley, Scott, Lee, Briana, Dai, Xing, Nie, Qing
Publicado 2010

Towards Anatomic Scale Agent-Based Modeling with a Massively Parallel Spatially Explicit General-Purpose Model of Enteric Tissue (SEGMEnT_HPC)

por Cockrell, Robert Chase, Christley, Scott, Chang, Eugene, An, Gary
Publicado 2015

Data structures and compression algorithms for high-throughput sequencing technologies

por Daily, Kenny, Rigor, Paul, Christley, Scott, Xie, Xiaohui, Baldi, Pierre
Publicado 2010

An automated homology-based approach for identifying transposable elements

por Kennedy, Ryan C, Unger, Maria F, Christley, Scott, Collins, Frank H, Madey, Gregory R
Publicado 2011

Biophysicochemical motifs in T cell receptor sequences as a potential biomarker for high-grade serous ovarian carcinoma

por Ostmeyer, Jared, Lucas, Elena, Christley, Scott, Lea, Jayanthi, Monson, Nancy, Tiro, Jasmin, Cowell, Lindsay G.
Publicado 2020

Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns

por Zheng, Zhenzhen, Christley, Scott, Chiu, William T, Blitz, Ira L, Xie, Xiaohui, Cho, Ken WY, Nie, Qing
Publicado 2014

Intestinal anastomotic injury alters spatially defined microbiome composition and function

por Shogan, Benjamin D, Smith, Daniel P, Christley, Scott, Gilbert, Jack A, Zaborina, Olga, Alverdy, John C
Publicado 2014

Statistical classifiers for diagnosing disease from immune repertoires: a case study using multiple sclerosis

por Ostmeyer, Jared, Christley, Scott, Rounds, William H., Toby, Inimary, Greenberg, Benjamin M., Monson, Nancy L., Cowell, Lindsay G.
Publicado 2017

Comparative genetics of Enterococcus faecalis intestinal tissue isolates before and after surgery in a rat model of colon anastomosis

por Christley, Scott, Shogan, Benjamin, Levine, Zoe, Koo, Hyun, Guyton, Kristina, Owens, Sarah, Gilbert, Jack, Zaborina, Olga, Alverdy, John C.
Publicado 2020

T Cell Receptor Repertoires Acquired via Routine Pap Testing May Help Refine Cervical Cancer and Precancer Risk Estimates

por Christley, Scott, Ostmeyer, Jared, Quirk, Lisa, Zhang, Wei, Sirak, Bradley, Giuliano, Anna R., Zhang, Song, Monson, Nancy, Tiro, Jasmin, Lucas, Elena, Cowell, Lindsay G.
Publicado 2021

VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data

por Christley, Scott, Levin, Mikhail K., Toby, Inimary T., Fonner, John M., Monson, Nancy L., Rounds, William H., Rubelt, Florian, Scarborough, Walter, Scheuermann, Richard H., Cowell, Lindsay G.
Publicado 2017

TCRMatch: Predicting T-Cell Receptor Specificity Based on Sequence Similarity to Previously Characterized Receptors

por Chronister, William D., Crinklaw, Austin, Mahajan, Swapnil, Vita, Randi, Koşaloğlu-Yalçın, Zeynep, Yan, Zhen, Greenbaum, Jason A., Jessen, Leon E., Nielsen, Morten, Christley, Scott, Cowell, Lindsay G., Sette, Alessandro, Peters, Bjoern
Publicado 2021

AIRR community curation and standardised representation for immunoglobulin and T cell receptor germline sets

por Lees, William D., Christley, Scott, Peres, Ayelet, Kos, Justin T., Corrie, Brian, Ralph, Duncan, Breden, Felix, Cowell, Lindsay G., Yaari, Gur, Corcoran, Martin, Karlsson Hedestam, Gunilla B., Ohlin, Mats, Collins, Andrew M., Watson, Corey T., Busse, Christian E.
Publicado 2023