RL-MLZerD: Multimeric protein docking using reinforcement learning

por Aderinwale, Tunde, Christoffer, Charles, Kihara, Daisuke
Publicado 2022

Assembly of Protein Complexes In and On the Membrane with Predicted Spatial Arrangement Constraints

por Christoffer, Charles, Harini, Kannan, Archit, Gupta, Kihara, Daisuke
Publicado 2023

LZerD Protein-Protein Docking Webserver Enhanced With de novo Structure Prediction

por Christoffer, Charles, Bharadwaj, Vijay, Luu, Ryan, Kihara, Daisuke
Publicado 2021

A global map of the protein shape universe

por Han, Xusi, Sit, Atilla, Christoffer, Charles, Chen, Siyang, Kihara, Daisuke
Publicado 2019

VESPER: global and local cryo-EM map alignment using local density vectors

por Han, Xusi, Terashi, Genki, Christoffer, Charles, Chen, Siyang, Kihara, Daisuke
Publicado 2021

Modeling disordered protein interactions from biophysical principles

por Peterson, Lenna X., Roy, Amitava, Christoffer, Charles, Terashi, Genki, Kihara, Daisuke
Publicado 2017

Navigating 3D electron microscopy maps with EM-SURFER

por Esquivel-Rodríguez, Juan, Xiong, Yi, Han, Xusi, Guang, Shuomeng, Christoffer, Charles, Kihara, Daisuke
Publicado 2015

LZerD webserver for pairwise and multiple protein–protein docking

por Christoffer, Charles, Chen, Siyang, Bharadwaj, Vijay, Aderinwale, Tunde, Kumar, Vidhur, Hormati, Matin, Kihara, Daisuke
Publicado 2021

Analyzing effect of quadruple multiple sequence alignments on deep learning based protein inter-residue distance prediction

por Jain, Aashish, Terashi, Genki, Kagaya, Yuki, Maddhuri Venkata Subramaniya, Sai Raghavendra, Christoffer, Charles, Kihara, Daisuke
Publicado 2021

Real-time structure search and structure classification for AlphaFold protein models

por Aderinwale, Tunde, Bharadwaj, Vijay, Christoffer, Charles, Terashi, Genki, Zhang, Zicong, Jahandideh, Rashidedin, Kagaya, Yuki, Kihara, Daisuke
Publicado 2022

Modeling the assembly order of multimeric heteroprotein complexes

por Peterson, Lenna X., Togawa, Yoichiro, Esquivel-Rodriguez, Juan, Terashi, Genki, Christoffer, Charles, Roy, Amitava, Shin, Woong-Hee, Kihara, Daisuke
Publicado 2018

Heterogeneity in Lowe Syndrome: Mutations Affecting the Phosphatase Domain of OCRL1 Differ in Impact on Enzymatic Activity and Severity of Cellular Phenotypes

por Lee, Jennifer J., Ramadesikan, Swetha, Black, Adrianna F., Christoffer, Charles, Pacheco, Andres F. Pacheco, Subramanian, Sneha, Hanna, Claudia B., Barth, Gillian, Stauffacher, Cynthia V., Kihara, Daisuke, Aguilar, Ruben Claudio
Publicado 2023