OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data

por Leng, Ning, Choi, Jeea, Chu, Li-Fang, Thomson, James A., Kendziorski, Christina, Stewart, Ron
Publicado 2016

Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments

por Bacher, Rhonda, Leng, Ning, Chu, Li-Fang, Ni, Zijian, Thomson, James A., Kendziorski, Christina, Stewart, Ron
Publicado 2018

An Expandable, Inducible Hemangioblast State Regulated by Fibroblast Growth Factor

por Vereide, David T., Vickerman, Vernella, Swanson, Scott A., Chu, Li-Fang, McIntosh, Brian E., Thomson, James A.
Publicado 2014

A statistical approach for identifying differential distributions in single-cell RNA-seq experiments

por Korthauer, Keegan D., Chu, Li-Fang, Newton, Michael A., Li, Yuan, Thomson, James, Stewart, Ron, Kendziorski, Christina
Publicado 2016

Enhancing biological signals and detection rates in single-cell RNA-seq experiments with cDNA library equalization

por Bacher, Rhonda, Chu, Li-Fang, Argus, Cara, Bolin, Jennifer M, Knight, Parker, Thomson, James A, Stewart, Ron, Kendziorski, Christina
Publicado 2021

SCnorm: robust normalization of single-cell RNA-seq data

por Bacher, Rhonda, Chu, Li-Fang, Leng, Ning, Gasch, Audrey P., Thomson, James A., Stewart, Ron M., Newton, Michael, Kendziorski, Christina
Publicado 2017

An In Vitro Human Segmentation Clock Model Derived from Embryonic Stem Cells

por Chu, Li-Fang, Mamott, Daniel, Ni, Zijian, Bacher, Rhonda, Liu, Cathy, Swanson, Scott, Kendziorski, Christina, Stewart, Ron, Thomson, James A.
Publicado 2019

Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm

por Chu, Li-Fang, Leng, Ning, Zhang, Jue, Hou, Zhonggang, Mamott, Daniel, Vereide, David T., Choi, Jeea, Kendziorski, Christina, Stewart, Ron, Thomson, James A.
Publicado 2016

Oscope identifies oscillatory genes in unsynchronized single cell RNA-seq experiments

por Leng, Ning, Chu, Li-Fang, Barry, Chris, Li, Yuan, Choi, Jeea, Li, Xiaomao, Jiang, Peng, Stewart, Ron M., Thomson, James A., Kendziorski, Christina
Publicado 2015

Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis

por Seirup, Morten, Chu, Li-Fang, Sengupta, Srikumar, Leng, Ning, Browder, Hadley, Kapadia, Kevin, Shafer, Christina M., Duffin, Bret, Elwell, Angela L., Bolin, Jennifer M., Swanson, Scott, Stewart, Ron, Kendziorski, Christina, Thomson, James A., Bacher, Rhonda
Publicado 2020

Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene Burst Highlights Early Gene Expression in the Blastema

por Stewart, Ron, Rascón, Cynthia Alexander, Tian, Shulan, Nie, Jeff, Barry, Chris, Chu, Li-Fang, Ardalani, Hamisha, Wagner, Ryan J., Probasco, Mitchell D., Bolin, Jennifer M., Leng, Ning, Sengupta, Srikumar, Volkmer, Michael, Habermann, Bianca, Tanaka, Elly M., Thomson, James A., Dewey, Colin N.
Publicado 2013

Mouse Tmem135 mutation reveals a mechanism involving mitochondrial dynamics that leads to age-dependent retinal pathologies

por Lee, Wei-Hua, Higuchi, Hitoshi, Ikeda, Sakae, Macke, Erica L, Takimoto, Tetsuya, Pattnaik, Bikash R, Liu, Che, Chu, Li-Fang, Siepka, Sandra M, Krentz, Kathleen J, Rubinstein, C Dustin, Kalejta, Robert F, Thomson, James A, Mullins, Robert F, Takahashi, Joseph S, Pinto, Lawrence H, Ikeda, Akihiro
Publicado 2016