Functional Bias and Spatial Organization of Genes in Mutational Hot and Cold Regions in the Human Genome

por Chuang, Jeffrey H, Li, Hao
Publicado 2004

Sequences conserved by selection across mouse and human malaria species

por Imamura, Hideo, Persampieri, Jason H, Chuang, Jeffrey H
Publicado 2007

Weak preservation of local neutral substitution rates across mammalian genomes

por Imamura, Hideo, Karro, John E, Chuang, Jeffrey H
Publicado 2009

CodingMotif: exact determination of overrepresented nucleotide motifs in coding sequences

por Ding, Yang, Lorenz, William A, Chuang, Jeffrey H
Publicado 2012

Whole-exome sequencing capture kit biases yield false negative mutation calls in TCGA cohorts

por Wang, Victor G., Kim, Hyunsoo, Chuang, Jeffrey H.
Publicado 2018

Measuring the prevalence of regional mutation rates: an analysis of silent substitutions in mammals, fungi, and insects

por Fox, Aleah K, Tuch, Brian B, Chuang, Jeffrey H
Publicado 2008

Distribution-based measures of tumor heterogeneity are sensitive to mutation calling and lack strong clinical predictive power

por Noorbakhsh, Javad, Kim, Hyunsoo, Namburi, Sandeep, Chuang, Jeffrey H.
Publicado 2018

Transcriptional Enhancers in Protein-Coding Exons of Vertebrate Developmental Genes

por Ritter, Deborah I., Dong, Zhiqiang, Guo, Su, Chuang, Jeffrey H.
Publicado 2012

pyBedGraph: a python package for fast operations on 1D genomic signal tracks

por Zhang, Henry B, Kim, Minji, Chuang, Jeffrey H, Ruan, Yijun
Publicado 2020

SAMPLER: Empirical distribution representations for rapid analysis of whole slide tissue images

por Mukashyaka, Patience, Sheridan, Todd B., Foroughi pour, Ali, Chuang, Jeffrey H.
Publicado 2023

Defects in translation-dependent quality control pathways lead to convergent molecular and neurodevelopmental pathology

por Terrey, Markus, Adamson, Scott I, Chuang, Jeffrey H, Ackerman, Susan L
Publicado 2021

COMIT: identification of noncoding motifs under selection in coding sequences

por Kural, Deniz, Ding, Yang, Wu, Jiantao, Korpi, Alicia M, Chuang, Jeffrey H
Publicado 2009

Integrating Chemical Footprinting Data into RNA Secondary Structure Prediction

por Zarringhalam, Kourosh, Meyer, Michelle M., Dotu, Ivan, Chuang, Jeffrey H., Clote, Peter
Publicado 2012

Activation of GCN2 kinase by ribosome stalling links translation elongation with translation initiation

por Ishimura, Ryuta, Nagy, Gabor, Dotu, Ivan, Chuang, Jeffrey H, Ackerman, Susan L
Publicado 2016

CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens

por Bais, Preeti, Namburi, Sandeep, Gatti, Daniel M, Zhang, Xinyu, Chuang, Jeffrey H
Publicado 2017

Deep learning features encode interpretable morphologies within histological images

por Foroughi pour, Ali, White, Brian S., Park, Jonghanne, Sheridan, Todd B., Chuang, Jeffrey H.
Publicado 2022

MIA-Sig: multiplex chromatin interaction analysis by signal processing and statistical algorithms

por Kim, Minji, Zheng, Meizhen, Tian, Simon Zhongyuan, Lee, Byoungkoo, Chuang, Jeffrey H., Ruan, Yijun
Publicado 2019

The Clp1 R140H mutation alters tRNA metabolism and mRNA 3′ processing in mouse models of pontocerebellar hypoplasia

por Monaghan, Caitlin E., Adamson, Scott I., Kapur, Mridu, Chuang, Jeffrey H., Ackerman, Susan L.
Publicado 2021

Fostering bioinformatics education through skill development of professors: Big Genomic Data Skills Training for Professors

por Zhan, Yingqian Ada, Wray, Charles Gregory, Namburi, Sandeep, Glantz, Spencer T., Laubenbacher, Reinhard, Chuang, Jeffrey H.
Publicado 2019

Mutations in DNA repair genes are associated with increased neo-antigen load and activated T cell infiltration in lung adenocarcinoma

por Chae, Young Kwang, Anker, Jonathan F., Bais, Preeti, Namburi, Sandeep, Giles, Francis J., Chuang, Jeffrey H.
Publicado 2017