Comparison of sequence-dependent tiling array normalization approaches

por Chung, Ho-Ryun, Vingron, Martin
Publicado 2009

Chromatin segmentation based on a probabilistic model for read counts explains a large portion of the epigenome

por Mammana, Alessandro, Chung, Ho-Ryun
Publicado 2015

Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks

por Lasserre, Julia, Chung, Ho-Ryun, Vingron, Martin
Publicado 2013

Inferring nucleosome positions with their histone mark annotation from ChIP data

por Mammana, Alessandro, Vingron, Martin, Chung, Ho-Ryun
Publicado 2013

EPIGENE: genome-wide transcription unit annotation using a multivariate probabilistic model of histone modifications

por Sahu, Anshupa, Li, Na, Dunkel, Ilona, Chung, Ho-Ryun
Publicado 2020

Inference of interactions between chromatin modifiers and histone modifications: from ChIP-Seq data to chromatin-signaling

por Perner, Juliane, Lasserre, Julia, Kinkley, Sarah, Vingron, Martin, Chung, Ho-Ryun
Publicado 2014

coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers

por van Bömmel, Alena, Love, Michael I., Chung, Ho-Ryun, Vingron, Martin
Publicado 2018

C1q/TNF-Related Protein 3 (CTRP-3) Deficiency of Adipocytes Affects White Adipose Tissue Mass but Not Systemic CTRP-3 Concentrations

por Schmid, Andreas, Roderfeld, Martin, Gehl, Jonas, Roeb, Elke, Nist, Andrea, Chung, Ho-Ryun, Stiewe, Thorsten, Karrasch, Thomas, Schäffler, Andreas
Publicado 2021

The Effect of Micrococcal Nuclease Digestion on Nucleosome Positioning Data

por Chung, Ho-Ryun, Dunkel, Ilona, Heise, Franziska, Linke, Christian, Krobitsch, Sylvia, Ehrenhofer-Murray, Ann E., Sperling, Silke R., Vingron, Martin
Publicado 2010

The NSL complex-mediated nucleosome landscape is required to maintain transcription fidelity and suppression of transcription noise

por Lam, Kin Chung, Chung, Ho-Ryun, Semplicio, Giuseppe, Iyer, Shantanu S., Gaub, Aline, Bhardwaj, Vivek, Holz, Herbert, Georgiev, Plamen, Akhtar, Asifa
Publicado 2019

Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq

por Glaser, Laura V, Steiger, Mara, Fuchs, Alisa, van Bömmel, Alena, Einfeldt, Edda, Chung, Ho-Ryun, Vingron, Martin, Meijsing, Sebastiaan H
Publicado 2021

Projection of healthcare demand in Germany and Switzerland urged by Omicron wave (January–March 2022)

por Gorji, Hossein, Stauffer, Noé, Lunati, Ivan, Caduff, Alexa, Bühler, Martin, Engel, Doortje, Chung, Ho Ryun, Loukas, Orestis, Feig, Sabine, Renz, Harald
Publicado 2023

Genome-wide H4 K16 acetylation by SAS-I is deposited independently of transcription and histone exchange

por Heise, Franziska, Chung, Ho-Ryun, Weber, Jan M., Xu, Zhenyu, Klein-Hitpass, Ludger, Steinmetz, Lars M., Vingron, Martin, Ehrenhofer-Murray, Ann E.
Publicado 2012

reChIP-seq reveals widespread bivalency of H3K4me3 and H3K27me3 in CD4(+) memory T cells

por Kinkley, Sarah, Helmuth, Johannes, Polansky, Julia K., Dunkel, Ilona, Gasparoni, Gilles, Fröhler, Sebastian, Chen, Wei, Walter, Jörn, Hamann, Alf, Chung, Ho-Ryun
Publicado 2016

ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors

por Starick, Stephan R., Ibn-Salem, Jonas, Jurk, Marcel, Hernandez, Céline, Love, Michael I., Chung, Ho-Ryun, Vingron, Martin, Thomas-Chollier, Morgane, Meijsing, Sebastiaan H.
Publicado 2015

Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer–promoter contacts

por Thormann, Verena, Rothkegel, Maika C, Schöpflin, Robert, Glaser, Laura V, Djuric, Petar, Li, Na, Chung, Ho-Ryun, Schwahn, Kevin, Vingron, Martin, Meijsing, Sebastiaan H
Publicado 2018

Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer–promoter contacts

por Thormann, Verena, Rothkegel, Maika C, Schöpflin, Robert, Glaser, Laura V, Djuric, Petar, Li, Na, Chung, Ho-Ryun, Schwahn, Kevin, Vingron, Martin, Meijsing, Sebastiaan H
Publicado 2018

Androgen and glucocorticoid receptor direct distinct transcriptional programs by receptor-specific and shared DNA binding sites

por Kulik, Marina, Bothe, Melissa, Kibar, Gözde, Fuchs, Alisa, Schöne, Stefanie, Prekovic, Stefan, Mayayo-Peralta, Isabel, Chung, Ho-Ryun, Zwart, Wilbert, Helsen, Christine, Claessens, Frank, Meijsing, Sebastiaan H
Publicado 2021

Timing of Blood Sample Processing Affects the Transcriptomic and Epigenomic Profiles in CD4(+) T-cells of Atopic Subjects

por Alhamdan, Fahd, Laubhahn, Kristina, Happle, Christine, Habener, Anika, Jirmo, Adan C., Thölken, Clemens, Conca, Raffaele, Chung, Ho-Ryun, Hansen, Gesine, Potaczek, Daniel P., Schaub, Bianca, Grychtol, Ruth, Garn, Holger
Publicado 2022

Dissecting the role of toll‐like receptor 7 in pancreatic cancer

por Stark, Maren, Nicolai, Marina, Tatura, Marina, Keber, Corinna U., Kaufmann, Andreas, Chung, Ho‐Ryun, Slater, Emily P., Heeschen, Christopher, Lawlor, Rita T., Scarpa, Aldo, Bartsch, Detlef K., Gress, Thomas M., Bauer, Stefan, Buchholz, Malte
Publicado 2023