MIRA: mutual information-based reporter algorithm for metabolic networks

por Cicek, A. Ercument, Roeder, Kathryn, Ozsoyoglu, Gultekin
Publicado 2014

MIRA: mutual information-based reporter algorithm for metabolic networks

por Cicek, A. Ercument, Roeder, Kathryn, Ozsoyoglu, Gultekin
Publicado 2015

Polishing copy number variant calls on exome sequencing data via deep learning

por Özden, Furkan, Alkan, Can, Çiçek, A. Ercüment
Publicado 2022

DeepND: Deep multitask learning of gene risk for comorbid neurodevelopmental disorders

por Beyreli, Ilayda, Karakahya, Oguzhan, Cicek, A. Ercument
Publicado 2022

iPathCase(KEGG): An iPad interface for KEGG metabolic pathways

por Johnson, Stephen R, Qi, Xinjian, Cicek, A Ercument, Ozsoyoglu, Gultekin
Publicado 2013

Hercules: a profile HMM-based hybrid error correction algorithm for long reads

por Firtina, Can, Bar-Joseph, Ziv, Alkan, Can, Cicek, A Ercument
Publicado 2018

ADEMA: An Algorithm to Determine Expected Metabolite Level Alterations Using Mutual Information

por Cicek, A. Ercument, Bederman, Ilya, Henderson, Leigh, Drumm, Mitchell L., Ozsoyoglu, Gultekin
Publicado 2013

PiDeeL: metabolic pathway-informed deep learning model for survival analysis and pathological classification of gliomas

por Kaynar, Gun, Cakmakci, Doruk, Bund, Caroline, Todeschi, Julien, Namer, Izzie Jacques, Cicek, A Ercument
Publicado 2023

Robust inference of kinase activity using functional networks

por Yılmaz, Serhan, Ayati, Marzieh, Schlatzer, Daniela, Çiçek, A. Ercüment, Chance, Mark R., Koyutürk, Mehmet
Publicado 2021

An online model composition tool for system biology models

por Coskun, Sarp A, Cicek, A Ercument, Lai, Nicola, Dash, Ranjan K, Ozsoyoglu, Z Meral, Ozsoyoglu, Gultekin
Publicado 2013

De novo ChIP-seq analysis

por He, Xin, Cicek, A. Ercument, Wang, Yuhao, Schulz, Marcel H., Le, Hai-Son, Bar-Joseph, Ziv
Publicado 2015

Detailed modeling of positive selection improves detection of cancer driver genes

por Zhao, Siming, Liu, Jun, Nanga, Pranav, Liu, Yuwen, Cicek, A. Ercument, Knoblauch, Nicholas, He, Chuan, Stephens, Matthew, He, Xin
Publicado 2019

Machine learning assisted intraoperative assessment of brain tumor margins using HRMAS NMR spectroscopy

por Cakmakci, Doruk, Karakaslar, Emin Onur, Ruhland, Elisa, Chenard, Marie-Pierre, Proust, Francois, Piotto, Martial, Namer, Izzie Jacques, Cicek, A. Ercument
Publicado 2020

PathCase-SB architecture and database design

por Cakmak, Ali, Qi, Xinjian, Coskun, Sarp A, Das, Mitali, Cheng, En, Cicek, A Ercument, Lai, Nicola, Ozsoyoglu, Gultekin, Ozsoyoglu, Z Meral
Publicado 2011

PathCase-SB: integrating data sources and providing tools for systems biology research

por Coskun, Sarp A, Qi, Xinjian, Cakmak, Ali, Cheng, En, Cicek, A Ercument, Yang, Lei, Jadeja, Rishiraj, Dash, Ranjan K, Lai, Nicola, Ozsoyoglu, Gultekin, Ozsoyoglu, Zehra Meral
Publicado 2012

Matrix Metalloproteinase-11 Promotes Early Mouse Mammary Gland Tumor Growth through Metabolic Reprogramming and Increased IGF1/AKT/FoxO1 Signaling Pathway, Enhanced ER Stress and A...

por Tan, Bing, Jaulin, Amélie, Bund, Caroline, Outilaft, Hassiba, Wendling, Corinne, Chenard, Marie-Pierrette, Alpy, Fabien, Cicek, A. Ercüment, Namer, Izzie J., Tomasetto, Catherine, Dali-Youcef, Nassim
Publicado 2020

Metabolomics of Small Intestine Neuroendocrine Tumors and Related Hepatic Metastases

por Imperiale, Alessio, Poncet, Gilles, Addeo, Pietro, Ruhland, Elisa, Roche, Colette, Battini, Stephanie, Cicek, A. Ercument, Chenard, Marie Pierrette, Hervieu, Valérie, Goichot, Bernard, Bachellier, Philippe, Walter, Thomas, Namer, Izzie Jacques
Publicado 2019

AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data

por Thibodeau, Asa, Eroglu, Alper, McGinnis, Christopher S., Lawlor, Nathan, Nehar-Belaid, Djamel, Kursawe, Romy, Marches, Radu, Conrad, Daniel N., Kuchel, George A., Gartner, Zev J., Banchereau, Jacques, Stitzel, Michael L., Cicek, A. Ercument, Ucar, Duygu
Publicado 2021

Metabolome Profiling by HRMAS NMR Spectroscopy of Pheochromocytomas and Paragangliomas Detects SDH Deficiency: Clinical and Pathophysiological Implications()()

por Imperiale, Alessio, Moussallieh, François-Marie, Roche, Philippe, Battini, Stéphanie, Cicek, A. Ercument, Sebag, Frédéric, Brunaud, Laurent, Barlier, Anne, Elbayed, Karim, Loundou, Anderson, Bachellier, Philippe, Goichot, Bernard, Stratakis, Constantine A., Pacak, Karel, Namer, Izzie-Jacques, Taïeb, David
Publicado 2015

Characterization of the transcriptional and metabolic responses of pediatric high grade gliomas to mTOR-HIF-1α axis inhibition

por Nguyen, Aurélia, Moussallieh, François Marie, Mackay, Alan, Cicek, A. Ercument, Coca, Andres, Chenard, Marie Pierre, Weingertner, Noelle, Lhermitte, Benoit, Letouzé, Eric, Guérin, Eric, Pencreach, Erwan, Jannier, Sarah, Guenot, Dominique, Namer, Izzie Jacques, Jones, Chris, Entz-Werlé, Natacha
Publicado 2017