A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines

por Cieślik, Marcin, Mura, Cameron
Publicado 2011

Combinatorial epigenetic patterns as quantitative predictors of chromatin biology

por Cieślik, Marcin, Bekiranov, Stefan
Publicado 2014

Genome-wide predictors of NF-κB recruitment and transcriptional activity

por Cieślik, Marcin, Bekiranov, Stefan
Publicado 2015

Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating early- and late-firing origins

por Mesner, Larry D., Valsakumar, Veena, Cieślik, Marcin, Pickin, Rebecca, Hamlin, Joyce L., Bekiranov, Stefan
Publicado 2013

Epigenetic reprogramming in the epithelial-to-mesenchymal transition

por Hoang, Stephen, Cieślik, Marcin, Chodaparambil, Sanjay, Baranova, Natalya, Kumar, Manish, Allison, David, Wamsley, Jake, Gray, Lisa, Mayo, Marty, Bekiranov, Stefan
Publicado 2012

Differential modulation of the androgen receptor for prostate cancer therapy depends on the DNA response element

por Kregel, Steven, Bagamasbad, Pia, He, Shihan, LaPensee, Elizabeth, Raji, Yemi, Brogley, Michele, Chinnaiyan, Arul, Cieslik, Marcin, Robins, Diane M
Publicado 2020

Unraveling the glycosylated immunopeptidome with HLA-Glyco

por Bedran, Georges, Polasky, Daniel A., Hsiao, Yi, Yu, Fengchao, da Veiga Leprevost, Felipe, Alfaro, Javier A., Cieslik, Marcin, Nesvizhskii, Alexey I.
Publicado 2023

Mass spectrometric profiling of HLA-B44 peptidomes provides evidence for tapasin-mediated tryptophan editing

por Kaur, Amanpreet, Surnilla, Avrokin, Zaitouna, Anita J., Basrur, Venkatesha, Mumphrey, Michael B., Grigorova, Irina, Cieslik, Marcin, Carrington, Mary, Nesvizhskii, Alexey I., Raghavan, Malini
Publicado 2023

Epigenetic coordination of signaling pathways during the epithelial-mesenchymal transition

por Cieślik, Marcin, Hoang, Stephen A, Baranova, Natalya, Chodaparambil, Sanjay, Kumar, Manish, Allison, David F, Xu, Xiaojiang, Wamsley, J Jacob, Gray, Lisa, Jones, David R, Mayo, Marty W, Bekiranov, Stefan
Publicado 2013

The use of exome capture RNA-seq for highly degraded RNA with application to clinical cancer sequencing

por Cieslik, Marcin, Chugh, Rashmi, Wu, Yi-Mi, Wu, Ming, Brennan, Christine, Lonigro, Robert, Su, Fengyun, Wang, Rui, Siddiqui, Javed, Mehra, Rohit, Cao, Xuhong, Lucas, David, Chinnaiyan, Arul M., Robinson, Dan
Publicado 2015

Common molecular features of H3K27M DMGs and PFA ependymomas map to hindbrain developmental pathways

por Pun, Matthew, Pratt, Drew, Nano, Patricia R., Joshi, Piyush K., Jiang, Li, Englinger, Bernhard, Rao, Arvind, Cieslik, Marcin, Chinnaiyan, Arul M., Aldape, Kenneth, Pfister, Stefan, Filbin, Mariella G., Bhaduri, Aparna, Venneti, Sriram
Publicado 2023

Metabolism drives macrophage heterogeneity in the tumor microenvironment

por Li, Shasha, Yu, Jiali, Huber, Amanda, Kryczek, Ilona, Wang, Zhuwen, Jiang, Long, Li, Xiong, Du, Wan, Li, Gaopeng, Wei, Shuang, Vatan, Linda, Szeliga, Wojciech, Chinnaiyan, Arul M., Green, Michael D., Cieslik, Marcin, Zou, Weiping
Publicado 2022

PFA ependymoma-associated protein EZHIP inhibits PRC2 activity through a H3 K27M-like mechanism

por Jain, Siddhant U., Do, Truman J., Lund, Peder J., Rashoff, Andrew Q., Diehl, Katharine L., Cieslik, Marcin, Bajic, Andrea, Juretic, Nikoleta, Deshmukh, Shriya, Venneti, Sriram, Muir, Tom W., Garcia, Benjamin A., Jabado, Nada, Lewis, Peter W.
Publicado 2019

LIMIT is an immunogenic lncRNA in cancer immunity and immunotherapy

por Li, Gaopeng, Kryczek, Ilona, Nam, Jutaek, Li, Xiong, Li, Shasha, Li, Jing, Wei, Shuang, Grove, Sara, Vatan, Linda, Zhou, Jiajia, Du, Wan, Lin, Heng, Wang, Ton, Subramanian, Chitra, Moon, James J., Cieslik, Marcin, Cohen, Mark, Zou, Weiping
Publicado 2021

The miR-124-Prolyl Hydroxylase P4HA1-MMP1 axis plays a critical role in prostate cancer progression

por Chakravarthi, Balabhadrapatruni V. S. K., Pathi, Satya S., Goswami, Moloy T., Cieślik, Marcin, Zheng, Heng, Nallasivam, Sivakumar, Arekapudi, Subramanyeswara R., Jing, Xiaojun, Siddiqui, Javed, Athanikar, Jyoti, Carskadon, Shannon L., Lonigro, Robert J., Kunju, Lakshmi P., Chinnaiyan, Arul M., Palanisamy, Nallasivam, Varambally, Sooryanarayana
Publicado 2014

Distinct structural classes of activating FOXA1 alterations in advanced prostate cancer

por Parolia, Abhijit, Cieslik, Marcin, Chu, Shih-Chun, Xiao, Lanbo, Ouchi, Takahiro, Zhang, Yuping, Wang, Xiaoju, Vats, Pankaj, Cao, Xuhong, Pitchiaya, Sethuramasundaram, Su, Fengyun, Wang, Rui, Feng, Felix Y., Wu, Yi-Mi, Lonigro, Robert J., Robinson, Dan R., Chinnaiyan, Arul M.
Publicado 2019

Identification and Validation of PCAT14 as Prognostic Biomarker in Prostate Cancer()

por Shukla, Sudhanshu, Zhang, Xiang, Niknafs, Yashar S., Xiao, Lanbo, Mehra, Rohit, Cieślik, Marcin, Ross, Ashley, Schaeffer, Edward, Malik, Bhavna, Guo, Shuling, Freier, Susan M., Bui, Huynh-Hoa, Siddiqui, Javed, Jing, Xiaojun, Cao, Xuhong, Dhanasekaran, Saravana M., Feng, Felix Y., Chinnaiyan, Arul M., Malik, Rohit
Publicado 2016

Therapeutic Targeting of BET Bromodomain Proteins in Castration-Resistant Prostate Cancer

por Asangani, Irfan A., Dommeti, Vijaya L., Wang, Xiaoju, Malik, Rohit, Cieslik, Marcin, Yang, Rendong, Escara-Wilke, June, Wilder-Romans, Kari, Dhanireddy, Sudheer, Engelke, Carl, Iyer, Mathew K., Jing, Xiaojun, Wu, Yi-Mi, Cao, Xuhong, Qin, Zhaohui S., Wang, Shaomeng, Feng, Felix Y., Chinnaiyan, Arul M.
Publicado 2014

Single-cell analyses of renal cell cancers reveal insights into tumor microenvironment, cell of origin, and therapy response

por Zhang, Yuping, Narayanan, Sathiya P., Mannan, Rahul, Raskind, Gregory, Wang, Xiaoming, Vats, Pankaj, Su, Fengyun, Hosseini, Noshad, Cao, Xuhong, Kumar-Sinha, Chandan, Ellison, Stephanie J., Giordano, Thomas J., Morgan, Todd M., Pitchiaya, Sethuramasundaram, Alva, Ajjai, Mehra, Rohit, Cieslik, Marcin, Dhanasekaran, Saravana M., Chinnaiyan, Arul M.
Publicado 2021

Characterizing the Therapeutic Potential of a Potent BET Degrader in Merkel Cell Carcinoma()

por Choi, Jae Eun, Verhaegen, Monique E., Yazdani, Sahr, Malik, Rohit, Harms, Paul W., Mangelberger, Doris, Tien, Jean, Cao, Xuhong, Wang, Yuping, Cieślik, Marcin, Gurkan, Jonathan, Yazdani, Mishaal, Jing, Xiaojun, Juckette, Kristin, Su, Fengyun, Wang, Rui, Zhou, Bing, Apel, Ingrid J., Wang, Shaomeng, Dlugosz, Andrzej A., Chinnaiyan, Arul M.
Publicado 2019