Epigenome remodelling in breast cancer: insights from an early in vitro model of carcinogenesis

por Locke, Warwick J, Clark, Susan J
Publicado 2012

Genomic profiling of CpG methylation and allelic specificity using quantitative high-throughput mass spectrometry: critical evaluation and improvements

por Coolen, Marcel W., Statham, Aaron L., Gardiner-Garden, Margaret, Clark, Susan J.
Publicado 2007

Obesity and Prader-Willi Syndrome Affect Heart Rate Recovery from Dynamic Resistance Exercise in Youth

por Castner, Diobel M., Clark, Susan J., Judelson, Daniel A., Rubin, Daniela A.
Publicado 2016

Benchmark study comparing liftover tools for genome conversion of epigenome sequencing data

por Luu, Phuc-Loi, Ong, Phuc-Thinh, Dinh, Thanh-Phuoc, Clark, Susan J
Publicado 2020

Epigenomics of mammary gland development

por Holliday, Holly, Baker, Laura A., Junankar, Simon R., Clark, Susan J., Swarbrick, Alexander
Publicado 2018

Epigenetic and phenotypic changes result from a continuous pre and post natal dietary exposure to phytoestrogens in an experimental population of mice

por Guerrero-Bosagna, Carlos M, Sabat, Pablo, Valdovinos, Fernanda S, Valladares, Luis E, Clark, Susan J
Publicado 2008

COBRA-Seq: Sensitive and Quantitative Methylome Profiling

por Varinli, Hilal, Statham, Aaron L., Clark, Susan J., Molloy, Peter L., Ross, Jason P.
Publicado 2015

NGSANE: a lightweight production informatics framework for high-throughput data analysis

por Buske, Fabian A., French, Hugh J., Smith, Martin A., Clark, Susan J., Bauer, Denis C.
Publicado 2014

Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer

por Taberlay, Phillippa C., Statham, Aaron L., Kelly, Theresa K., Clark, Susan J., Jones, Peter A.
Publicado 2014

Genome-wide nucleosome occupancy and DNA methylation profiling of four human cell lines

por Statham, Aaron L., Taberlay, Phillippa C., Kelly, Theresa K., Jones, Peter A., Clark, Susan J.
Publicado 2014

Repitools: an R package for the analysis of enrichment-based epigenomic data

por Statham, Aaron L., Strbenac, Dario, Coolen, Marcel W., Stirzaker, Clare, Clark, Susan J., Robinson, Mark D.
Publicado 2010

Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA

por Statham, Aaron L., Robinson, Mark D., Song, Jenny Z., Coolen, Marcel W., Stirzaker, Clare, Clark, Susan J.
Publicado 2012

Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA

por Skvortsova, Ksenia, Zotenko, Elena, Luu, Phuc-Loi, Gould, Cathryn M., Nair, Shalima S., Clark, Susan J., Stirzaker, Clare
Publicado 2017

Calling differentially methylated regions from whole genome bisulphite sequencing with DMRcate

por Peters, Timothy J, Buckley, Michael J, Chen, Yunshun, Smyth, Gordon K, Goodnow, Christopher C, Clark, Susan J
Publicado 2021

Headloop suppression PCR and its application to selective amplification of methylated DNA sequences

por Rand, Keith N., Ho, Thu, Qu, Wenjia, Mitchell, Susan M., White, Rose, Clark, Susan J., Molloy, Peter L.
Publicado 2005

Copy-number-aware differential analysis of quantitative DNA sequencing data

por Robinson, Mark D., Strbenac, Dario, Stirzaker, Clare, Statham, Aaron L., Song, Jenny, Speed, Terence P., Clark, Susan J.
Publicado 2012

MethPanel: a parallel pipeline and interactive analysis tool for multiplex bisulphite PCR sequencing to assess DNA methylation biomarker panels for disease detection

por Luu, Phuc-Loi, Ong, Phuc-Thinh, Loc, Tran Thai Huu, Lam, Dilys, Pidsley, Ruth, Stirzaker, Clare, Clark, Susan J
Publicado 2020

Discovery pipeline for epigenetically deregulated miRNAs in cancer: integration of primary miRNA transcription

por Hulf, Toby, Sibbritt, Tennille, Wiklund, Erik D, Bert, Saul, Strbenac, Dario, Statham, Aaron L, Robinson, Mark D, Clark, Susan J
Publicado 2011

Multiple links between 5-methylcytosine content of mRNA and translation

por Schumann, Ulrike, Zhang, He-Na, Sibbritt, Tennille, Pan, Anyu, Horvath, Attila, Gross, Simon, Clark, Susan J., Yang, Li, Preiss, Thomas
Publicado 2020

Genome-scale methylation assessment did not identify prognostic biomarkers in oral tongue carcinomas

por Lim, Annette M., Wong, Nicholas C., Pidsley, Ruth, Zotenko, Elena, Corry, June, Dobrovic, Alexander, Clark, Susan J., Rischin, Danny, Solomon, Benjamin
Publicado 2016