SMRT-Cappable-seq reveals complex operon variants in bacteria

por Yan, Bo, Boitano, Matthew, Clark, Tyson A., Ettwiller, Laurence
Publicado 2018

Direct Detection and Sequencing of Damaged DNA Bases

por Clark, Tyson A, Spittle, Kristi E, Turner, Stephen W, Korlach, Jonas
Publicado 2011

RNAmotifs: prediction of multivalent RNA motifs that control alternative splicing

por Cereda, Matteo, Pozzoli, Uberto, Rot, Gregor, Juvan, Peter, Schweitzer, Anthony, Clark, Tyson, Ule, Jernej
Publicado 2014

Affy exon tissues: exon levels in normal tissues in human, mouse and rat

por Pohl, Andrew A., Sugnet, Charles W., Clark, Tyson A., Smith, Kayla, Fujita, Pauline A., Cline, Melissa S.
Publicado 2009

Detecting DNA Modifications from SMRT Sequencing Data by Modeling Sequence Context Dependence of Polymerase Kinetic

por Feng, Zhixing, Fang, Gang, Korlach, Jonas, Clark, Tyson, Luong, Khai, Zhang, Xuegong, Wong, Wing, Schadt, Eric
Publicado 2013

A comparative analysis of methylome profiles of Campylobacter jejuni sheep abortion isolate and gastroenteric strains using PacBio data

por Mou, Kathy T., Muppirala, Usha K., Severin, Andrew J., Clark, Tyson A., Boitano, Matthew, Plummer, Paul J.
Publicado 2015

Enhanced 5-methylcytosine detection in single-molecule, real-time sequencing via Tet1 oxidation

por Clark, Tyson A, Lu, Xingyu, Luong, Khai, Dai, Qing, Boitano, Matthew, Turner, Stephen W, He, Chuan, Korlach, Jonas
Publicado 2013

Novel m4C modification in type I restriction-modification systems

por Morgan, Richard D., Luyten, Yvette A., Johnson, Samuel A., Clough, Emily M., Clark, Tyson A., Roberts, Richard J.
Publicado 2016

Direct detection of DNA methylation during single-molecule, real-time sequencing

por Flusberg, Benjamin A., Webster, Dale, Lee, Jessa, Travers, Kevin, Olivares, Eric, Clark, Tyson A., Korlach, Jonas, Turner, Stephen W.
Publicado 2010

Discovery of tissue-specific exons using comprehensive human exon microarrays

por Clark, Tyson A, Schweitzer, Anthony C, Chen, Tina X, Staples, Michelle K, Lu, Gang, Wang, Hui, Williams, Alan, Blume, John E
Publicado 2007

Genetic Stabilization of the Drug-Resistant PMEN1 Pneumococcus Lineage by Its Distinctive DpnIII Restriction-Modification System

por Eutsey, Rory A., Powell, Evan, Dordel, Janina, Salter, Susannah J., Clark, Tyson A., Korlach, Jonas, Ehrlich, Garth D., Hiller, N. Luisa
Publicado 2015

Analysis of RNA base modification and structural rearrangement by single-molecule real-time detection of reverse transcription

por Vilfan, Igor D, Tsai, Yu-Chih, Clark, Tyson A, Wegener, Jeffrey, Dai, Qing, Yi, Chengqi, Pan, Tao, Turner, Stephen W, Korlach, Jonas
Publicado 2013

Covalent Modification of Bacteriophage T4 DNA Inhibits CRISPR-Cas9

por Bryson, Alexandra L., Hwang, Young, Sherrill-Mix, Scott, Wu, Gary D., Lewis, James D., Black, Lindsay, Clark, Tyson A., Bushman, Frederic D.
Publicado 2015

DNA Methylation Assessed by SMRT Sequencing Is Linked to Mutations in Neisseria meningitidis Isolates

por Sater, Mohamad R. Abdul, Lamelas, Araceli, Wang, Guilin, Clark, Tyson A., Röltgen, Katharina, Mane, Shrikant, Korlach, Jonas, Pluschke, Gerd, Schmid, Christoph D.
Publicado 2015

Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing

por Wang, Bo, Tseng, Elizabeth, Regulski, Michael, Clark, Tyson A, Hon, Ting, Jiao, Yinping, Lu, Zhenyuan, Olson, Andrew, Stein, Joshua C., Ware, Doreen
Publicado 2016

Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing

por Clark, Tyson A., Murray, Iain A., Morgan, Richard D., Kislyuk, Andrey O., Spittle, Kristi E., Boitano, Matthew, Fomenkov, Alexey, Roberts, Richard J., Korlach, Jonas
Publicado 2012

Complete Genome Sequence of Moraxella catarrhalis Strain CCRI-195ME, Isolated from the Middle Ear

por Tan, Aimee, Blakeway, Luke V., Bakaletz, Lauren O., Boitano, Matthew, Clark, Tyson A., Korlach, Jonas, Jennings, Michael P., Peak, Ian R., Seib, Kate L.
Publicado 2017

Detailed analysis of HTT repeat elements in human blood using targeted amplification‐free long‐read sequencing

por Höijer, Ida, Tsai, Yu‐Chih, Clark, Tyson A., Kotturi, Paul, Dahl, Niklas, Stattin, Eva‐Lena, Bondeson, Marie‐Louise, Feuk, Lars, Gyllensten, Ulf, Ameur, Adam
Publicado 2018

A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing

por Das, Debopriya, Clark, Tyson A., Schweitzer, Anthony, Yamamoto, Miki, Marr, Henry, Arribere, Josh, Minovitsky, Simon, Poliakov, Alexander, Dubchak, Inna, Blume, John E., Conboy, John G.
Publicado 2007

Comparative genomics of enterohemorrhagic Escherichia coli O145:H28 demonstrates a common evolutionary lineage with Escherichia coli O157:H7

por Cooper, Kerry K, Mandrell, Robert E, Louie, Jacqueline W, Korlach, Jonas, Clark, Tyson A, Parker, Craig T, Huynh, Steven, Chain, Patrick S, Ahmed, Sanaa, Carter, Michelle Qiu
Publicado 2014