taxMaps: comprehensive and highly accurate taxonomic classification of short-read data in reasonable time

por Corvelo, André, Clarke, Wayne E., Robine, Nicolas, Zody, Michael C.
Publicado 2018

Detecting de Novo Homoeologous Recombination Events in Cultivated Brassica napus Using a Genome-Wide SNP Array

por Higgins, Erin E., Clarke, Wayne E., Howell, Elaine C., Armstrong, Susan J., Parkin, Isobel A. P.
Publicado 2018

Narrow genetic base shapes population structure and linkage disequilibrium in an industrial oilseed crop, Brassica carinata A. Braun

por Khedikar, Yogendra, Clarke, Wayne E., Chen, Lifeng, Higgins, Erin E., Kagale, Sateesh, Koh, Chu Shin, Bennett, Rick, Parkin, Isobel A. P.
Publicado 2020

Single-nucleotide polymorphism identification and genotyping in Camelina sativa

por Singh, Ravinder, Bollina, Venkatesh, Higgins, Erin E., Clarke, Wayne E., Eynck, Christina, Sidebottom, Christine, Gugel, Richard, Snowdon, Rod, Parkin, Isobel A. P.
Publicado 2015

De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes

por Links, Matthew G, Holub, Eric, Jiang, Rays HY, Sharpe, Andrew G, Hegedus, Dwayne, Beynon, Elena, Sillito, Dean, Clarke, Wayne E, Uzuhashi, Shihomi, Borhan, Mohammad H
Publicado 2011

Ancient orphan crop joins modern era: gene-based SNP discovery and mapping in lentil

por Sharpe, Andrew G, Ramsay, Larissa, Sanderson, Lacey-Anne, Fedoruk, Michael J, Clarke, Wayne E, Li, Rong, Kagale, Sateesh, Vijayan, Perumal, Vandenberg, Albert, Bett, Kirstin E
Publicado 2013

Genomic DNA Enrichment Using Sequence Capture Microarrays: a Novel Approach to Discover Sequence Nucleotide Polymorphisms (SNP) in Brassica napus L

por Clarke, Wayne E., Parkin, Isobel A., Gajardo, Humberto A., Gerhardt, Daniel J., Higgins, Erin, Sidebottom, Christine, Sharpe, Andrew G., Snowdon, Rod J., Federico, Maria L., Iniguez-Luy, Federico L.
Publicado 2013

Correction: Genomic DNA Enrichment Using Sequence Capture Microarrays: a Novel Approach to Discover Sequence Nucleotide Polymorphisms (SNP) in Brassica napus L

por Clarke, Wayne E., Parkin, Isobel A., Gajardo, Humberto A., Gerhardt, Daniel J., Higgins, Erin, Sidebottom, Christine, Sharpe, Andrew G., Snowdon, Rod J., Federico, Maria L., Iniguez-Luy, Federico L.
Publicado 2013

Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes

por Ebler, Jana, Ebert, Peter, Clarke, Wayne E., Rausch, Tobias, Audano, Peter A., Houwaart, Torsten, Mao, Yafei, Korbel, Jan O., Eichler, Evan E., Zody, Michael C., Dilthey, Alexander T., Marschall, Tobias
Publicado 2022

The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

por Rolfe, Stephen A., Strelkov, Stephen E., Links, Matthew G., Clarke, Wayne E., Robinson, Stephen J., Djavaheri, Mohammad, Malinowski, Robert, Haddadi, Parham, Kagale, Sateesh, Parkin, Isobel A. P., Taheri, Ali, Borhan, M. Hossein
Publicado 2016

The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure

por Kagale, Sateesh, Koh, Chushin, Nixon, John, Bollina, Venkatesh, Clarke, Wayne E., Tuteja, Reetu, Spillane, Charles, Robinson, Stephen J., Links, Matthew G., Clarke, Carling, Higgins, Erin E., Huebert, Terry, Sharpe, Andrew G., Parkin, Isobel A. P.
Publicado 2014

An archived activation tagged population of Arabidopsis thaliana to facilitate forward genetics approaches

por Robinson, Stephen J, Tang, Lily H, Mooney, Brent AG, McKay, Sheldon J, Clarke, Wayne E, Links, Matthew G, Karcz, Steven, Regan, Sharon, Wu, Yun-Yun, Gruber, Margaret Y, Cui, Dejun, Yu, Min, Parkin, Isobel AP
Publicado 2009

High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios

por Byrska-Bishop, Marta, Evani, Uday S., Zhao, Xuefang, Basile, Anna O., Abel, Haley J., Regier, Allison A., Corvelo, André, Clarke, Wayne E., Musunuri, Rajeeva, Nagulapalli, Kshithija, Fairley, Susan, Runnels, Alexi, Winterkorn, Lara, Lowy, Ernesto, Paul Flicek, Germer, Soren, Brand, Harrison, Hall, Ira M., Talkowski, Michael E., Narzisi, Giuseppe, Zody, Michael C.
Publicado 2022

A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome

por Clarke, Wayne E., Higgins, Erin E., Plieske, Joerg, Wieseke, Ralf, Sidebottom, Christine, Khedikar, Yogendra, Batley, Jacqueline, Edwards, Dave, Meng, Jinling, Li, Ruiyuan, Lawley, Cynthia Taylor, Pauquet, Jérôme, Laga, Benjamin, Cheung, Wing, Iniguez-Luy, Federico, Dyrszka, Emmanuelle, Rae, Stephen, Stich, Benjamin, Snowdon, Rod J., Sharpe, Andrew G., Ganal, Martin W., Parkin, Isobel A. P.
Publicado 2016

A crowdsourced set of curated structural variants for the human genome

por Chapman, Lesley M., Spies, Noah, Pai, Patrick, Lim, Chun Shen, Carroll, Andrew, Narzisi, Giuseppe, Watson, Christopher M., Proukakis, Christos, Clarke, Wayne E., Nariai, Naoki, Dawson, Eric, Jones, Garan, Blankenberg, Daniel, Brueffer, Christian, Xiao, Chunlin, Kolora, Sree Rohit Raj, Alexander, Noah, Wolujewicz, Paul, Ahmed, Azza E., Smith, Graeme, Shehreen, Saadlee, Wenger, Aaron M., Salit, Marc, Zook, Justin M.
Publicado 2020

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

por Parkin, Isobel AP, Koh, Chushin, Tang, Haibao, Robinson, Stephen J, Kagale, Sateesh, Clarke, Wayne E, Town, Chris D, Nixon, John, Krishnakumar, Vivek, Bidwell, Shelby L, Denoeud, France, Belcram, Harry, Links, Matthew G, Just, Jérémy, Clarke, Carling, Bender, Tricia, Huebert, Terry, Mason, Annaliese S, Pires, J Chris, Barker, Guy, Moore, Jonathan, Walley, Peter G, Manoli, Sahana, Batley, Jacqueline, Edwards, David, Nelson, Matthew N, Wang, Xiyin, Paterson, Andrew H, King, Graham, Bancroft, Ian, Chalhoub, Boulos, Sharpe, Andrew G
Publicado 2014

A strategy for building and using a human reference pangenome

por Llamas, Bastien, Narzisi, Giuseppe, Schneider, Valerie, Audano, Peter A., Biederstedt, Evan, Blauvelt, Lon, Bradbury, Peter, Chang, Xian, Chin, Chen-Shan, Fungtammasan, Arkarachai, Clarke, Wayne E., Cleary, Alan, Ebler, Jana, Eizenga, Jordan, Sibbesen, Jonas A., Markello, Charles J., Garrison, Erik, Garg, Shilpa, Hickey, Glenn, Lazo, Gerard R., Lin, Michael F., Mahmoud, Medhat, Marschall, Tobias, Minkin, Ilia, Monlong, Jean, Musunuri, Rajeeva L., Sagayaradj, Sagayamary, Novak, Adam M., Rautiainen, Mikko, Regier, Allison, Sedlazeck, Fritz J., Siren, Jouni, Souilmi, Yassine, Wagner, Justin, Wrightsman, Travis, Yokoyama, Toshiyuki T., Zeng, Qiandong, Zook, Justin M., Paten, Benedict, Busby, Ben
Publicado 2021

Curated variation benchmarks for challenging medically-relevant autosomal genes

por Wagner, Justin, Olson, Nathan D, Harris, Lindsay, McDaniel, Jennifer, Cheng, Haoyu, Fungtammasan, Arkarachai, Hwang, Yih-Chii, Gupta, Richa, Wenger, Aaron M, Rowell, William J, Khan, Ziad M, Farek, Jesse, Zhu, Yiming, Pisupati, Aishwarya, Mahmoud, Medhat, Xiao, Chunlin, Yoo, Byunggil, Sahraeian, Sayed Mohammad Ebrahim, Miller, Danny E., Jáspez, David, Lorenzo-Salazar, José M., Muñoz-Barrera, Adrián, Rubio-Rodríguez, Luis A., Flores, Carlos, Narzisi, Giuseppe, Evani, Uday Shanker, Clarke, Wayne E., Lee, Joyce, Mason, Christopher E., Lincoln, Stephen E., Miga, Karen H., Ebbert, Mark T. W., Shumate, Alaina, Li, Heng, Chin, Chen-Shan, Zook, Justin M, Sedlazeck, Fritz J
Publicado 2022

Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program

por Taliun, Daniel, Harris, Daniel N., Kessler, Michael D., Carlson, Jedidiah, Szpiech, Zachary A., Torres, Raul, Taliun, Sarah A. Gagliano, Corvelo, André, Gogarten, Stephanie M., Kang, Hyun Min, Pitsillides, Achilleas N., LeFaive, Jonathon, Lee, Seung-been, Tian, Xiaowen, Browning, Brian L., Das, Sayantan, Emde, Anne-Katrin, Clarke, Wayne E., Loesch, Douglas P., Shetty, Amol C., Blackwell, Thomas W., Smith, Albert V., Wong, Quenna, Liu, Xiaoming, Conomos, Matthew P., Bobo, Dean M., Aguet, François, Albert, Christine, Alonso, Alvaro, Ardlie, Kristin G., Arking, Dan E., Aslibekyan, Stella, Auer, Paul L., Barnard, John, Barr, R. Graham, Barwick, Lucas, Becker, Lewis C., Beer, Rebecca L., Benjamin, Emelia J., Bielak, Lawrence F., Blangero, John, Boehnke, Michael, Bowden, Donald W., Brody, Jennifer A., Burchard, Esteban G., Cade, Brian E., Casella, James F., Chalazan, Brandon, Chasman, Daniel I., Chen, Yii-Der Ida, Cho, Michael H., Choi, Seung Hoan, Chung, Mina K., Clish, Clary B., Correa, Adolfo, Curran, Joanne E., Custer, Brian, Darbar, Dawood, Daya, Michelle, de Andrade, Mariza, DeMeo, Dawn L., Dutcher, Susan K., Ellinor, Patrick T., Emery, Leslie S., Eng, Celeste, Fatkin, Diane, Fingerlin, Tasha, Forer, Lukas, Fornage, Myriam, Franceschini, Nora, Fuchsberger, Christian, Fullerton, Stephanie M., Germer, Soren, Gladwin, Mark T., Gottlieb, Daniel J., Guo, Xiuqing, Hall, Michael E., He, Jiang, Heard-Costa, Nancy L., Heckbert, Susan R., Irvin, Marguerite R., Johnsen, Jill M., Johnson, Andrew D., Kaplan, Robert, Kardia, Sharon L. R., Kelly, Tanika, Kelly, Shannon, Kenny, Eimear E., Kiel, Douglas P., Klemmer, Robert, Konkle, Barbara A., Kooperberg, Charles, Köttgen, Anna, Lange, Leslie A., Lasky-Su, Jessica, Levy, Daniel, Lin, Xihong, Lin, Keng-Han, Liu, Chunyu, Loos, Ruth J. F., Garman, Lori, Gerszten, Robert, Lubitz, Steven A., Lunetta, Kathryn L., Mak, Angel C. Y., Manichaikul, Ani, Manning, Alisa K., Mathias, Rasika A., McManus, David D., McGarvey, Stephen T., Meigs, James B., Meyers, Deborah A., Mikulla, Julie L., Minear, Mollie A., Mitchell, Braxton D., Mohanty, Sanghamitra, Montasser, May E., Montgomery, Courtney, Morrison, Alanna C., Murabito, Joanne M., Natale, Andrea, Natarajan, Pradeep, Nelson, Sarah C., North, Kari E., O’Connell, Jeffrey R., Palmer, Nicholette D., Pankratz, Nathan, Peloso, Gina M., Peyser, Patricia A., Pleiness, Jacob, Post, Wendy S., Psaty, Bruce M., Rao, D. C., Redline, Susan, Reiner, Alexander P., Roden, Dan, Rotter, Jerome I., Ruczinski, Ingo, Sarnowski, Chloé, Schoenherr, Sebastian, Schwartz, David A., Seo, Jeong-Sun, Seshadri, Sudha, Sheehan, Vivien A., Sheu, Wayne H., Shoemaker, M. Benjamin, Smith, Nicholas L., Smith, Jennifer A., Sotoodehnia, Nona, Stilp, Adrienne M., Tang, Weihong, Taylor, Kent D., Telen, Marilyn, Thornton, Timothy A., Tracy, Russell P., Van Den Berg, David J., Vasan, Ramachandran S., Viaud-Martinez, Karine A., Vrieze, Scott, Weeks, Daniel E., Weir, Bruce S., Weiss, Scott T., Weng, Lu-Chen, Willer, Cristen J., Zhang, Yingze, Zhao, Xutong, Arnett, Donna K., Ashley-Koch, Allison E., Barnes, Kathleen C., Boerwinkle, Eric, Gabriel, Stacey, Gibbs, Richard, Rice, Kenneth M., Rich, Stephen S., Silverman, Edwin K., Qasba, Pankaj, Gan, Weiniu, Papanicolaou, George J., Nickerson, Deborah A., Browning, Sharon R., Zody, Michael C., Zöllner, Sebastian, Wilson, James G., Cupples, L. Adrienne, Laurie, Cathy C., Jaquish, Cashell E., Hernandez, Ryan D., O’Connor, Timothy D., Abecasis, Gonçalo R.
Publicado 2021