Zooming in on Inflammatory Bowel Disease: Microbial and Proteomic Features Associated With IBD in Colonic Microenvironments

por Tamburini, Sabrina, Clemente, Jose C.
Publicado 2016

Flexible taxonomic assignment of ambiguous sequencing reads

por Clemente, José C, Jansson, Jesper, Valiente, Gabriel
Publicado 2011

Physical Activity, Immune System, and the Microbiome in Cardiovascular Disease

por Fernandez, Dawn M., Clemente, Jose C., Giannarelli, Chiara
Publicado 2018

Optimized ancestral state reconstruction using Sankoff parsimony

por Clemente, José C, Ikeo, Kazuho, Valiente, Gabriel, Gojobori, Takashi
Publicado 2009

Detecting and phasing minor single-nucleotide variants from long-read sequencing data

por Feng, Zhixing, Clemente, Jose C., Wong, Brandon, Schadt, Eric E.
Publicado 2021

Novel technologies to characterize and engineer the microbiome in inflammatory bowel disease

por Boix-Amorós, Alba, Monaco, Hilary, Sambataro, Elisa, Clemente, Jose C.
Publicado 2022

UCHIME improves sensitivity and speed of chimera detection

por Edgar, Robert C., Haas, Brian J., Clemente, Jose C., Quince, Christopher, Knight, Rob
Publicado 2011

Changes in vaginal microbiota following antimicrobial and probiotic therapy

por Macklaim, Jean M., Clemente, Jose C., Knight, Rob, Gloor, Gregory B., Reid, Gregor
Publicado 2015

Simultaneous Amplicon Sequencing to Explore Co-Occurrence Patterns of Bacterial, Archaeal and Eukaryotic Microorganisms in Rumen Microbial Communities

por Kittelmann, Sandra, Seedorf, Henning, Walters, William A., Clemente, Jose C., Knight, Rob, Gordon, Jeffrey I., Janssen, Peter H.
Publicado 2013

Global biogeography of highly diverse protistan communities in soil

por Bates, Scott T, Clemente, Jose C, Flores, Gilberto E, Walters, William Anthony, Parfrey, Laura Wegener, Knight, Rob, Fierer, Noah
Publicado 2013

Nurture trumps nature in a longitudinal survey of salivary bacterial communities in twins from early adolescence to early adulthood

por Stahringer, Simone S., Clemente, Jose C., Corley, Robin P., Hewitt, John, Knights, Dan, Walters, William A., Knight, Rob, Krauter, Kenneth S.
Publicado 2012

Gut microbiome of mothers delivering prematurely shows reduced diversity and lower relative abundance of Bifidobacterium and Streptococcus

por Dahl, Cecilie, Stanislawski, Maggie, Iszatt, Nina, Mandal, Siddhartha, Lozupone, Catherine, Clemente, Jose C., Knight, Rob, Stigum, Hein, Eggesbø, Merete
Publicado 2017

Viral Inactivation Impacts Microbiome Estimates in a Tissue-Specific Manner

por Boix-Amorós, Alba, Piras, Enrica, Bu, Kevin, Wallach, David, Stapylton, Matthew, Fernández-Sesma, Ana, Malaspina, Dolores, Clemente, Jose C.
Publicado 2021

Biphasic assembly of the murine intestinal microbiota during early development

por Pantoja-Feliciano, Ida Gisela, Clemente, Jose C, Costello, Elizabeth K, Perez, Maria E, Blaser, Martin J, Knight, Rob, Dominguez-Bello, Maria Gloria
Publicado 2013

The CCR2/MCP-1 Chemokine Pathway and Lung Adenocarcinoma

por Mittal, Payal, Wang, Liqing, Akimova, Tatiana, Leach, Craig A., Clemente, Jose C., Sender, Matthew R., Chen, Yao, Turunen, Brandon J., Hancock, Wayne W.
Publicado 2020

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

por McDonald, Daniel, Clemente, Jose C, Kuczynski, Justin, Rideout, Jai Ram, Stombaugh, Jesse, Wendel, Doug, Wilke, Andreas, Huse, Susan, Hufnagle, John, Meyer, Folker, Knight, Rob, Caporaso, J Gregory
Publicado 2012

Randomised, double-blind, placebo-controlled trial with azithromycin selects for anti-inflammatory microbial metabolites in the emphysematous lung

por Segal, Leopoldo N, Clemente, Jose C, Wu, Benjamin G, Wikoff, William R, Gao, Zhan, Li, Yonghua, Ko, Jane P, Rom, William N, Blaser, Martin J, Weiden, Michael D
Publicado 2017

Oral vancomycin treatment suppresses gut trypsin activity and preserves intestinal barrier function during EAE

por Bianchimano, Paola, Iwanowski, Kacper, Smith, Emma M., Cantor, Adam, Leone, Paola, Bongers, Gerold, Gonzalez, Carlos G., Hongsup, Yoon, Elias, Joshua, Weiner, Howard L., Clemente, Jose C., Tankou, Stephanie K.
Publicado 2023

Mining the microbiota to identify gut commensals modulating neuroinflammation in a mouse model of multiple sclerosis

por Bianchimano, Paola, Britton, Graham J., Wallach, David S., Smith, Emma M., Cox, Laura M., Liu, Shirong, Iwanowski, Kacper, Weiner, Howard L., Faith, Jeremiah J., Clemente, Jose C., Tankou, Stephanie K.
Publicado 2022

Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation

por Segal, Leopoldo N, Alekseyenko, Alexander V, Clemente, Jose C, Kulkarni, Rohan, Wu, Benjamin, Chen, Hao, Berger, Kenneth I, Goldring, Roberta M, Rom, William N, Blaser, Martin J, Weiden, Michael D
Publicado 2013