Voices of the new generation: science in a state of benign confusion

por Coelho, Luis Pedro
Publicado 2020

Building machine learning systems with Python

por Coelho, Luis Pedro, Richert, Willi
Publicado 2015

Building machine learning systems with Python: explore machine learning and deep learning techniques for building intelligent systems using scikit-learn and TensorFlow

por Coelho, Luis Pedro, Richert, Willi, Brucher, Matthieu
Publicado 2018

SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing

por Pan, Shaojun, Zhao, Xing-Ming, Coelho, Luis Pedro
Publicado 2023

Quantifying the distribution of probes between subcellular locations using unsupervised pattern unmixing

por Coelho, Luis Pedro, Peng, Tao, Murphy, Robert F.
Publicado 2010

A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments

por Pan, Shaojun, Zhu, Chengkai, Zhao, Xing-Ming, Coelho, Luis Pedro
Publicado 2022

Macrel: antimicrobial peptide screening in genomes and metagenomes

por Santos-Júnior, Célio Dias, Pan, Shaojun, Zhao, Xing-Ming, Coelho, Luis Pedro
Publicado 2020

metaSNV: A tool for metagenomic strain level analysis

por Costea, Paul Igor, Munch, Robin, Coelho, Luis Pedro, Paoli, Lucas, Sunagawa, Shinichi, Bork, Peer
Publicado 2017

NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language

por Coelho, Luis Pedro, Alves, Renato, Monteiro, Paulo, Huerta-Cepas, Jaime, Freitas, Ana Teresa, Bork, Peer
Publicado 2019

metaMIC: reference-free misassembly identification and correction of de novo metagenomic assemblies

por Lai, Senying, Pan, Shaojun, Sun, Chuqing, Coelho, Luis Pedro, Chen, Wei-Hua, Zhao, Xing-Ming
Publicado 2022

ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics

por Gschwind, Rémi, Ugarcina Perovic, Svetlana, Weiss, Maja, Petitjean, Marie, Lao, Julie, Coelho, Luis Pedro, Ruppé, Etienne
Publicado 2023

Metagenomic assessment of the global diversity and distribution of bacteria and fungi

por Bahram, Mohammad, Netherway, Tarquin, Frioux, Clémence, Ferretti, Pamela, Coelho, Luis Pedro, Geisen, Stefan, Bork, Peer, Hildebrand, Falk
Publicado 2020

Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes

por Colin, Sebastien, Coelho, Luis Pedro, Sunagawa, Shinichi, Bowler, Chris, Karsenti, Eric, Bork, Peer, Pepperkok, Rainer, de Vargas, Colomban
Publicado 2017

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

por Huerta-Cepas, Jaime, Forslund, Kristoffer, Coelho, Luis Pedro, Szklarczyk, Damian, Jensen, Lars Juhl, von Mering, Christian, Bork, Peer
Publicado 2017

Selective maternal seeding and environment shape the human gut microbiome

por Korpela, Katri, Costea, Paul, Coelho, Luis Pedro, Kandels-Lewis, Stefanie, Willemsen, Gonneke, Boomsma, Dorret I., Segata, Nicola, Bork, Peer
Publicado 2018

GUNC: detection of chimerism and contamination in prokaryotic genomes

por Orakov, Askarbek, Fullam, Anthony, Coelho, Luis Pedro, Khedkar, Supriya, Szklarczyk, Damian, Mende, Daniel R., Schmidt, Thomas S. B., Bork, Peer
Publicado 2021

Gene expression changes in the salivary glands of Anopheles coluzzii elicited by Plasmodium berghei infection

por Pinheiro-Silva, Renato, Borges, Lara, Coelho, Luís Pedro, Cabezas-Cruz, Alejandro, Valdés, James J., do Rosário, Virgílio, de la Fuente, José, Domingos, Ana
Publicado 2015

Subspecies in the global human gut microbiome

por Costea, Paul I, Coelho, Luis Pedro, Sunagawa, Shinichi, Munch, Robin, Huerta‐Cepas, Jaime, Forslund, Kristoffer, Hildebrand, Falk, Kushugulova, Almagul, Zeller, Georg, Bork, Peer
Publicado 2017

MOCAT2: a metagenomic assembly, annotation and profiling framework

por Kultima, Jens Roat, Coelho, Luis Pedro, Forslund, Kristoffer, Huerta-Cepas, Jaime, Li, Simone S., Driessen, Marja, Voigt, Anita Yvonne, Zeller, Georg, Sunagawa, Shinichi, Bork, Peer
Publicado 2016

Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes

por Khedkar, Supriya, Smyshlyaev, Georgy, Letunic, Ivica, Maistrenko, Oleksandr M, Coelho, Luis Pedro, Orakov, Askarbek, Forslund, Sofia K, Hildebrand, Falk, Luetge, Mechthild, Schmidt, Thomas S B, Barabas, Orsolya, Bork, Peer
Publicado 2022