cnvOffSeq: detecting intergenic copy number variation using off-target exome sequencing data

por Bellos, Evangelos, Coin, Lachlan J. M.
Publicado 2014

cnvHiTSeq: integrative models for high-resolution copy number variation detection and genotyping using population sequencing data

por Bellos, Evangelos, Johnson, Michael R, M Coin, Lachlan J
Publicado 2012

Real-time resolution of short-read assembly graph using ONT long reads

por Nguyen, Son Hoang, Cao, Minh Duc, Coin, Lachlan J. M.
Publicado 2021

Drug resistance prediction for Mycobacterium tuberculosis with reference graphs

por Hall, Michael B., Lima, Leandro, Coin, Lachlan J. M., Iqbal, Zamin
Publicado 2023

sCNAphase: using haplotype resolved read depth to genotype somatic copy number alterations from low cellularity aneuploid tumors

por Chen, Wenhan, Robertson, Alan J., Ganesamoorthy, Devika, Coin, Lachlan J.M.
Publicado 2017

Simulating the dynamics of targeted capture sequencing with CapSim

por Cao, Minh Duc, Ganesamoorthy, Devika, Zhou, Chenxi, Coin, Lachlan J M
Publicado 2018

Ongoing human chromosome end extension revealed by analysis of BioNano and nanopore data

por Shao, Haojing, Zhou, Chenxi, Cao, Minh Duc, Coin, Lachlan J. M.
Publicado 2018

No evidence of SARS-CoV-2 reverse transcription and integration as the origin of chimeric transcripts in patient tissues

por Parry, Rhys, Gifford, Robert J., Lytras, Spyros, Ray, Stuart C., Coin, Lachlan J. M.
Publicado 2021

Nanopore sequencing as a scalable, cost-effective platform for analyzing polyclonal vector integration sites following clinical T cell therapy

por Zhang, Ping, Ganesamoorthy, Devika, Nguyen, Son Hoang, Au, Raymond, Coin, Lachlan J, Tey, Siok-Keen
Publicado 2020

Computational analysis and prediction of PE_PGRS proteins using machine learning

por Li, Fuyi, Guo, Xudong, Xiang, Dongxu, Pitt, Miranda E., Bainomugisa, Arnold, Coin, Lachlan J.M.
Publicado 2022

Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning

por Teng, Haotian, Cao, Minh Duc, Hall, Michael B, Duarte, Tania, Wang, Sheng, Coin, Lachlan J M
Publicado 2018

npInv: accurate detection and genotyping of inversions using long read sub-alignment

por Shao, Haojing, Ganesamoorthy, Devika, Duarte, Tania, Cao, Minh Duc, Hoggart, Clive J., Coin, Lachlan J. M.
Publicado 2018

Correction to: Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning

por Teng, Haotian, Cao, Minh Duc, Hall, Michael B, Duarte, Tania, Wang, Sheng, Coin, Lachlan J M
Publicado 2019

Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION(TM) sequencing

por Cao, Minh Duc, Ganesamoorthy, Devika, Elliott, Alysha G., Zhang, Huihui, Cooper, Matthew A., Coin, Lachlan J.M.
Publicado 2016

ATTIC is an integrated approach for predicting A-to-I RNA editing sites in three species

por Chen, Ruyi, Li, Fuyi, Guo, Xudong, Bi, Yue, Li, Chen, Pan, Shirui, Coin, Lachlan J M, Song, Jiangning
Publicado 2023

A population model for genotyping indels from next-generation sequence data

por Shao, Haojing, Bellos, Evangelos, Yin, Hanjiudai, Liu, Xiao, Zou, Jing, Li, Yingrui, Wang, Jun, Coin, Lachlan J. M.
Publicado 2013

Scaffolding and completing genome assemblies in real-time with nanopore sequencing

por Cao, Minh Duc, Nguyen, Son Hoang, Ganesamoorthy, Devika, Elliott, Alysha G., Cooper, Matthew A., Coin, Lachlan J. M.
Publicado 2017

Transcriptomic Studies of Malaria: a Paradigm for Investigation of Systemic Host-Pathogen Interactions

por Lee, Hyun Jae, Georgiadou, Athina, Otto, Thomas D., Levin, Michael, Coin, Lachlan J., Conway, David J., Cunnington, Aubrey J.
Publicado 2018

Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing

por Pitt, Miranda E, Nguyen, Son H, Duarte, Tânia P S, Teng, Haotian, Blaskovich, Mark A T, Cooper, Matthew A, Coin, Lachlan J M
Publicado 2020

MultiPhen: Joint Model of Multiple Phenotypes Can Increase Discovery in GWAS

por O’Reilly, Paul F., Hoggart, Clive J., Pomyen, Yotsawat, Calboli, Federico C. F., Elliott, Paul, Jarvelin, Marjo-Riitta, Coin, Lachlan J. M.
Publicado 2012