Correlations between DNA methylation levels and nucleosome enrichment in the human genome

por Collings, Clayton K, Anderson, John N
Publicado 2013

Links between DNA methylation and nucleosome occupancy in the human genome

por Collings, Clayton K., Anderson, John N.
Publicado 2017

Are nucleosome positions in vivo primarily determined by histone–DNA sequence preferences?

por Stein, Arnold, Takasuka, Taichi E., Collings, Clayton K.
Publicado 2010

Effects of DNA methylation on nucleosome stability

por Collings, Clayton K., Waddell, Peter J., Anderson, John N.
Publicado 2013

HIV chromatin is a preferred target for drugs that bind in the DNA minor groove

por Collings, Clayton K., Little, Donald W., Schafer, Samuel J., Anderson, John N.
Publicado 2019

Oligonucleotide Sequence Motifs as Nucleosome Positioning Signals

por Collings, Clayton K., Fernandez, Alfonso G., Pitschka, Chad G., Hawkins, Troy B., Anderson, John N.
Publicado 2010

An Mll4/COMPASS-Lsd1 epigenetic axis governs enhancer function and pluripotency transition in embryonic stem cells

por Cao, Kaixiang, Collings, Clayton K., Morgan, Marc A., Marshall, Stacy A., Rendleman, Emily J., Ozark, Patrick A., Smith, Edwin R., Shilatifard, Ali
Publicado 2018

SET1A/COMPASS and shadow enhancers in the regulation of homeotic gene expression

por Cao, Kaixiang, Collings, Clayton K., Marshall, Stacy A., Morgan, Marc A., Rendleman, Emily J., Wang, Lu, Sze, Christie C., Sun, Tianjiao, Bartom, Elizabeth T., Shilatifard, Ali
Publicado 2017

Histone H3K4 methylation-dependent and -independent functions of Set1A/COMPASS in embryonic stem cell self-renewal and differentiation

por Sze, Christie C., Cao, Kaixiang, Collings, Clayton K., Marshall, Stacy A., Rendleman, Emily J., Ozark, Patrick A., Chen, Fei Xavier, Morgan, Marc A., Wang, Lu, Shilatifard, Ali
Publicado 2017

A cytoplasmic COMPASS is necessary for cell survival and triple-negative breast cancer pathogenesis by regulating metabolism

por Wang, Lu, Collings, Clayton K., Zhao, Zibo, Cozzolino, Kira Alia, Ma, Quanhong, Liang, Kaiwei, Marshall, Stacy A., Sze, Christie C., Hashizume, Rintaro, Savas, Jeffrey Nicholas, Shilatifard, Ali
Publicado 2017

Improving needle biopsy accuracy in small renal mass using tumor-specific DNA methylation markers

por Chopra, Sameer, Liu, Jie, Alemozaffar, Mehrdad, Nichols, Peter W., Aron, Manju, Weisenberger, Daniel J., Collings, Clayton K., Syan, Sumeet, Hu, Brian, Desai, Mihir, Aron, Monish, Duddalwar, Vinay, Gill, Inderbir, Liang, Gangning, Siegmund, Kimberly D.
Publicado 2016

A cryptic Tudor domain links BRWD2/PHIP to COMPASS-mediated histone H3K4 methylation

por Morgan, Marc A.J., Rickels, Ryan A., Collings, Clayton K., He, Xiaolin, Cao, Kaixiang, Herz, Hans-Martin, Cozzolino, Kira A., Abshiru, Nebiyu A., Marshall, Stacy A., Rendleman, Emily J., Sze, Christie C., Piunti, Andrea, Kelleher, Neil L., Savas, Jeffrey N., Shilatifard, Ali
Publicado 2017

Stepwise activities of mSWI/SNF family chromatin remodeling complexes direct T cell activation and exhaustion

por Battistello, Elena, Hixon, Kimberlee A., Comstock, Dawn E., Collings, Clayton K., Chen, Xufeng, Hernaez, Javier Rodriguez, Lee, Soobeom, Cervantes, Kasey S., Hinkley, Madeline M., Ntatsoulis, Konstantinos, Cesarano, Annamaria, Hockemeyer, Kathryn, Haining, W. Nicholas, Witkowski, Matthew T., Qi, Jun, Tsirigos, Aristotelis, Perna, Fabiana, Aifantis, Iannis, Kadoch, Cigall
Publicado 2023

The SWI/SNF chromatin-remodeling subunit DPF2 facilitates NRF2-dependent antiinflammatory and antioxidant gene expression

por Mas, Gloria, Man, Na, Nakata, Yuichiro, Martinez-Caja, Concepcion, Karl, Daniel, Beckedorff, Felipe, Tamiro, Francesco, Chen, Chuan, Duffort, Stephanie, Itonaga, Hidehiro, Mookhtiar, Adnan K., Kunkalla, Kranthi, Valencia, Alfredo M., Collings, Clayton K., Kadoch, Cigall, Vega, Francisco, Kogan, Scott C., Morey, Lluis, Bilbao, Daniel, Nimer, Stephen D.
Publicado 2023

A Carcinogen-induced mouse model recapitulates the molecular alterations of human muscle invasive bladder cancer

por Fantini, Damiano, Glaser, Alexander P., Rimar, Kalen J., Wang, Yiduo, Schipma, Matthew, Varghese, Nobish, Rademaker, Alfred, Behdad, Amir, Yellapa, Aparna, Yu, Yanni, Sze, Christie Ching-Lin, Wang, Lu, Zhao, Zibo, Crawford, Susan E., Hu, Deqing, Licht, Jonathan D., Collings, Clayton K., Bartom, Elizabeth, Theodorescu, Dan, Shilatifard, Ali, Meeks, Joshua J.
Publicado 2018

DYRK1A promotes viral entry of highly pathogenic human coronaviruses in a kinase-independent manner

por Strine, Madison S., Cai, Wesley L., Wei, Jin, Alfajaro, Mia Madel, Filler, Renata B., Biering, Scott B., Sarnik, Sylvia, Chow, Ryan D., Patil, Ajinkya, Cervantes, Kasey S., Collings, Clayton K., DeWeirdt, Peter C., Hanna, Ruth E., Schofield, Kevin, Hulme, Christopher, Konermann, Silvana, Doench, John G., Hsu, Patrick D., Kadoch, Cigall, Yan, Qin, Wilen, Craig B.
Publicado 2023

Pharmacological disruption of mSWI/SNF complex activity restricts SARS-CoV-2 infection

por Wei, Jin, Patil, Ajinkya, Collings, Clayton K., Alfajaro, Mia Madel, Liang, Yu, Cai, Wesley L., Strine, Madison S., Filler, Renata B., DeWeirdt, Peter C., Hanna, Ruth E., Menasche, Bridget L., Ökten, Arya, Peña-Hernández, Mario A., Klein, Jon, McNamara, Andrew, Rosales, Romel, McGovern, Briana L., Luis Rodriguez, M., García-Sastre, Adolfo, White, Kris M., Qin, Yiren, Doench, John G., Yan, Qin, Iwasaki, Akiko, Zwaka, Thomas P., Qi, Jun, Kadoch, Cigall, Wilen, Craig B.
Publicado 2023