Optimizing Metabolite Production Using Periodic Oscillations

por Sowa, Steven W., Baldea, Michael, Contreras, Lydia M.
Publicado 2014

Small RNAs in mycobacteria: an unfolding story

por Haning, Katie, Cho, Seung Hee, Contreras, Lydia M.
Publicado 2014

PNPase and RhlB Interact and Reduce the Cellular Availability of Oxidized RNA in Deinococcus radiodurans

por Han, Runhua, Jiang, Jessie, Fang, Jaden, Contreras, Lydia M.
Publicado 2022

Characterization of epitranscriptome reader proteins experimentally and in silico: Current knowledge and future perspectives beyond the YTH domain

por Miller, Lucas G., Demny, Madeline, Tamamis, Phanourios, Contreras, Lydia M.
Publicado 2023

Applying a New REFINE Approach in Zymomonas mobilis Identifies Novel sRNAs That Confer Improved Stress Tolerance Phenotypes

por Haning, Katie, Engels, Sean M., Williams, Paige, Arnold, Margaret, Contreras, Lydia M.
Publicado 2020

Identification of Novel sRNAs in Mycobacterial Species

por Tsai, Chen-Hsun, Baranowski, Catherine, Livny, Jonathan, McDonough, Kathleen A., Wade, Joseph T., Contreras, Lydia M.
Publicado 2013

Identification and Characterization of 5′ Untranslated Regions (5′UTRs) in Zymomonas mobilis as Regulatory Biological Parts

por Cho, Seung Hee, Haning, Katie, Shen, Wei, Blome, Cameron, Li, Runxia, Yang, Shihui, Contreras, Lydia M.
Publicado 2017

A strategy to quantify myofibroblast activation on a continuous spectrum

por Hillsley, Alexander, Santoso, Matthew S., Engels, Sean M., Halwachs, Kathleen N., Contreras, Lydia M., Rosales, Adrianne M.
Publicado 2022

Signal Recognition Particle RNA Contributes to Oxidative Stress Response in Deinococcus radiodurans by Modulating Catalase Localization

por Han, Runhua, Fang, Jaden, Jiang, Jessie, Gaidamakova, Elena K., Tkavc, Rok, Daly, Michael J., Contreras, Lydia M.
Publicado 2020

Zymomonas mobilis as a model system for production of biofuels and biochemicals

por Yang, Shihui, Fei, Qiang, Zhang, Yaoping, Contreras, Lydia M., Utturkar, Sagar M., Brown, Steven D., Himmel, Michael E., Zhang, Min
Publicado 2016

RNA oxidation in chromatin modification and DNA-damage response following exposure to formaldehyde

por Gonzalez-Rivera, Juan C., Sherman, Mark W., Wang, Dongyu S., Chuvalo-Abraham, Jamie C. L., Hildebrandt Ruiz, Lea, Contreras, Lydia M.
Publicado 2020

Particulate matter composition drives differential molecular and morphological responses in lung epithelial cells

por Engels, Sean M., Kamat, Pratik, Pafilis, G. Stavros, Li, Yukang, Agrawal, Anshika, Haller, Daniel J., Phillip, Jude M., Contreras, Lydia M.
Publicado 2023

Group II intron–ribosome association protects intron RNA from degradation

por Contreras, Lydia M., Huang, Tao, Piazza, Carol Lyn, Smith, Dorie, Qu, Guosheng, Gelderman, Grant, Potratz, Jeffrey P., Russell, Rick, Belfort, Marlene
Publicado 2013

Post-transcriptional air pollution oxidation to the cholesterol biosynthesis pathway promotes pulmonary stress phenotypes

por Gonzalez-Rivera, Juan C., Baldridge, Kevin C., Wang, Dongyu S., Patel, Kanan, Chuvalo-Abraham, Jamie C. L., Hildebrandt Ruiz, Lea, Contreras, Lydia M.
Publicado 2020

Quaternary arrangement of an active, native group II intron ribonucleoprotein complex revealed by small-angle X-ray scattering

por Gupta, Kushol, Contreras, Lydia M., Smith, Dorie, Qu, Guosheng, Huang, Tao, Spruce, Lynn A., Seeholzer, Steven H., Belfort, Marlene, Van Duyne, Gregory D.
Publicado 2014

High-throughput in vivo mapping of RNA accessible interfaces to identify functional sRNA binding sites

por Mihailovic, Mia K., Vazquez-Anderson, Jorge, Li, Yan, Fry, Victoria, Vimalathas, Praveen, Herrera, Daniel, Lease, Richard A., Powell, Warren B., Contreras, Lydia M.
Publicado 2018

Exploiting post-transcriptional regulation to probe RNA structures in vivo via fluorescence

por Sowa, Steven W., Vazquez-Anderson, Jorge, Clark, Chelsea A., De La Peña, Ricardo, Dunn, Kaitlin, Fung, Emily K., Khoury, Mark J., Contreras, Lydia M.
Publicado 2015

Integrative FourD omics approach profiles the target network of the carbon storage regulatory system

por Sowa, Steven W., Gelderman, Grant, Leistra, Abigail N., Buvanendiran, Aishwarya, Lipp, Sarah, Pitaktong, Areen, Vakulskas, Christopher A., Romeo, Tony, Baldea, Michael, Contreras, Lydia M.
Publicado 2017

A small RNA regulates pprM, a modulator of pleiotropic proteins promoting DNA repair, in Deinococcus radiodurans under ionizing radiation

por Villa, Jordan K., Han, Runhua, Tsai, Chen-Hsun, Chen, Angela, Sweet, Philip, Franco, Gabriela, Vaezian, Respina, Tkavc, Rok, Daly, Michael J., Contreras, Lydia M.
Publicado 2021

Optimization of a novel biophysical model using large scale in vivo antisense hybridization data displays improved prediction capabilities of structurally accessible RNA regions

por Vazquez-Anderson, Jorge, Mihailovic, Mia K., Baldridge, Kevin C., Reyes, Kristofer G., Haning, Katie, Cho, Seung Hee, Amador, Paul, Powell, Warren B., Contreras, Lydia M.
Publicado 2017