Identifying Conserved Generic Aspergillus spp. Co-Expressed Gene Modules Associated with Germination Using Cross-Platform and Cross-Species Transcriptomics

por Baltussen, Tim J. H., Coolen, Jordy P. M., Verweij, Paul E., Dijksterhuis, Jan, Melchers, Willem J. G.
Publicado 2021

Phenotypic plasticity and the evolution of azole resistance in Aspergillus fumigatus; an expression profile of clinical isolates upon exposure to itraconazole

por Hokken, Margriet W. J., Zoll, Jan, Coolen, Jordy P. M., Zwaan, Bas J., Verweij, Paul E., Melchers, Willem J. G.
Publicado 2019

The C(2)H(2) transcription factor SltA is required for germination and hyphal development in Aspergillus fumigatus

por Baltussen, Tim J.H., van Rhijn, Norman, Coolen, Jordy P.M., Dijksterhuis, Jan, Verweij, Paul E., Bromley, Michael J., Melchers, Willem J.G.
Publicado 2023

The Transcriptome Response to Azole Compounds in Aspergillus fumigatus Shows Differential Gene Expression across Pathways Essential for Azole Resistance and Cell Survival

por Hokken, Margriet W. J., Coolen, Jordy P. M., Steenbreker, Hilbert, Zoll, Jan, Baltussen, Tim J. H., Verweij, Paul E., Melchers, Willem J. G.
Publicado 2023

Nosocomial outbreak of multi-resistant Streptococcus pneumoniae serotype 15A in a centre for chronic pulmonary diseases

por Bastiaens, Guido J. H., Cremers, Amelieke J. H., Coolen, Jordy P. M., Nillesen, Mayke T., Boeree, Martin J., Hopman, Joost, Wertheim, Heiman F. L.
Publicado 2018

Centre-specific bacterial pathogen typing affects infection-control decision making

por Coolen, Jordy P. M., Jamin, Casper, Savelkoul, Paul H. M., Rossen, John W. A., Wertheim, Heiman F. L., Matamoros, Sébastien P., van Alphen, Lieke B.
Publicado 2021

MGIT Enriched Shotgun Metagenomics for Routine Identification of Nontuberculous Mycobacteria: a Route to Personalized Health Care

por Schildkraut, Jodie A., Coolen, Jordy P. M., Severin, Heleen, Koenraad, Ellen, Aalders, Nicole, Melchers, Willem J. G., Hoefsloot, Wouter, Wertheim, Heiman F. L., van Ingen, Jakko
Publicado 2023

Targeting the 16S rRNA Gene by Reverse Complement PCR Next-Generation Sequencing: Specific and Sensitive Detection and Identification of Microbes Directly in Clinical Samples

por Moorlag, Simone J. C. F. M., Coolen, Jordy P. M., van den Bosch, Bart, Jin, Elisabeth Hui-Mei, Buil, Jochem B., Wertheim, Heiman F. L., Melchers, Willem J. G.
Publicado 2023

Development of an algorithm to discriminate between plasmid- and chromosomal-mediated AmpC β-lactamase production in Escherichia coli by elaborate phenotypic and genotypic characte...

por Coolen, Jordy P M, den Drijver, Evert P M, Kluytmans, Jan A J W, Verweij, Jaco J, Lamberts, Bram A, Soer, Joke A C J, Verhulst, Carlo, Wertheim, Heiman F L, Kolwijck, Eva
Publicado 2019

Draft genome sequence of Francisella tularensis subsp. holarctica BD11-00177

por Coolen, Jordy P. M., Sjödin, Andreas, Maraha, Boulos, Hajer, Gerard F., Forsman, Mats, Verspui, Ellen, Frenay, Hendrina M.E., Notermans, Daan W., de Vries, Maaike C., Reubsaet, Frans A.G., Paauw, Armand, Roeselers, Guus
Publicado 2013

Genome-wide analysis in Escherichia coli unravels a high level of genetic homoplasy associated with cefotaxime resistance

por Coolen, Jordy P. M., den Drijver, Evert P. M., Verweij, Jaco J., Schildkraut, Jodie A., Neveling, Kornelia, Melchers, Willem J. G., Kolwijck, Eva, Wertheim, Heiman F. L., Kluytmans, Jan A. J. W., Huynen, Martijn A.
Publicado 2021

Risk Assessment After a Severe Hospital-Acquired Infection Associated With Carbapenemase-Producing Pseudomonas aeruginosa

por Hopman, Joost, Meijer, Corianne, Kenters, Nikki, Coolen, Jordy P. M., Ghamati, Mohammad R., Mehtar, Shaheen, van Crevel, Reinout, Morshuis, Wim J., Verhagen, Ad F. T. M., van den Heuvel, Michel M., Voss, Andreas, Wertheim, Heiman F. L.
Publicado 2019

RNA Sequencing Elucidates Drug-Specific Mechanisms of Antibiotic Tolerance and Resistance in Mycobacterium abscessus

por Schildkraut, Jodie A., Coolen, Jordy P. M., Burbaud, Sophie, Sangen, Jasper J. N., Kwint, Michael P., Floto, R. Andres, op den Camp, Huub J. M., te Brake, Lindsey H. M., Wertheim, Heiman F. L., Neveling, Kornelia, Hoefsloot, Wouter, van Ingen, Jakko
Publicado 2022

SARS-CoV-2 whole-genome sequencing using reverse complement PCR: For easy, fast and accurate outbreak and variant analysis.

por Coolen, Jordy P.M., Wolters, Femke, Tostmann, Alma, van Groningen, Lenneke F.J., Bleeker-Rovers, Chantal P., Tan, Edward C.T.H., van der Geest-Blankert, Nannet, Hautvast, Jeannine L.A., Hopman, Joost, Wertheim, Heiman F.L., Rahamat-Langendoen, Janette C., Storch, Marko, Melchers, Willem J.G.
Publicado 2021

A Prioritized and Validated Resource of Mitochondrial Proteins in Plasmodium Identifies Unique Biology

por van Esveld, Selma L., Meerstein‐Kessel, Lisette, Boshoven, Cas, Baaij, Jochem F., Barylyuk, Konstantin, Coolen, Jordy P. M., van Strien, Joeri, Duim, Ronald A. J., Dutilh, Bas E., Garza, Daniel R., Letterie, Marijn, Proellochs, Nicholas I., de Ridder, Michelle N., Venkatasubramanian, Prashanna Balaji, de Vries, Laura E., Waller, Ross F., Kooij, Taco W. A., Huynen, Martijn A.
Publicado 2021

External Quality Assessment of SARS-CoV-2 Sequencing: an ESGMD-SSM Pilot Trial across 15 European Laboratories

por Wegner, Fanny, Roloff, Tim, Huber, Michael, Cordey, Samuel, Ramette, Alban, Gerth, Yannick, Bertelli, Claire, Stange, Madlen, Seth-Smith, Helena M. B., Mari, Alfredo, Leuzinger, Karoline, Cerutti, Lorenzo, Harshman, Keith, Xenarios, Ioannis, Le Mercier, Philippe, Bittel, Pascal, Neuenschwander, Stefan, Opota, Onya, Fuchs, Jonas, Panning, Marcus, Michel, Charlotte, Hallin, Marie, Demuyser, Thomas, De Mendonca, Ricardo, Savelkoul, Paul, Dingemans, Jozef, van der Veer, Brian, Boers, Stefan A., Claas, Eric C. J., Coolen, Jordy P. M., Melchers, Willem J. G., Gunell, Marianne, Kallonen, Teemu, Vuorinen, Tytti, Hakanen, Antti J., Bernhoff, Eva, Hetland, Marit Andrea Klokkhammer, Golan Berman, Hadar, Adar, Sheera, Moran-Gilad, Jacob, Wolf, Dana G., Leib, Stephen L., Nolte, Oliver, Kaiser, Laurent, Schmutz, Stefan, Kufner, Verena, Zaheri, Maryam, Trkola, Alexandra, Aamot, Hege Vangstein, Hirsch, Hans H., Greub, Gilbert, Egli, Adrian
Publicado 2022