Construction of Strand-seq libraries in open nanoliter arrays

por Hanlon, Vincent C.T., Chan, Daniel D., Hamadeh, Zeid, Wang, Yanni, Mattsson, Carl-Adam, Spierings, Diana C.J., Coope, Robin J.N., Lansdorp, Peter M.
Publicado 2022

Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics’ GemCode Sequencing Data

por Coombe, Lauren, Warren, René L., Jackman, Shaun D., Yang, Chen, Vandervalk, Benjamin P., Moore, Richard A., Pleasance, Stephen, Coope, Robin J., Bohlmann, Joerg, Holt, Robert A., Jones, Steven J. M., Birol, Inanc
Publicado 2016

Extraction-free clinical detection of SARS-CoV-2 virus from saline gargle samples using Hamilton STARlet liquid handler

por Gadkar, Vijay J., Goldfarb, David M., Al-Rawahi, Ghada N., Srigley, Jocelyn A., Smailus, Duane E., Coope, Robin J. N., Pleasance, Stephen, Watson, Nicole, Chen, Tammy, Lam, Sunny, Hoang, Linda, Tilley, Peter A. G.
Publicado 2023

Complete Mitochondrial Genome of a Gymnosperm, Sitka Spruce (Picea sitchensis), Indicates a Complex Physical Structure

por Jackman, Shaun D, Coombe, Lauren, Warren, René L, Kirk, Heather, Trinh, Eva, MacLeod, Tina, Pleasance, Stephen, Pandoh, Pawan, Zhao, Yongjun, Coope, Robin J, Bousquet, Jean, Bohlmann, Joerg, Jones, Steven J M, Birol, Inanc
Publicado 2020

Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA

por Haile, Simon, Corbett, Richard D., Bilobram, Steve, Mungall, Karen, Grande, Bruno M., Kirk, Heather, Pandoh, Pawan, MacLeod, Tina, McDonald, Helen, Bala, Miruna, Coope, Robin J., Moore, Richard A., Mungall, Andrew J., Zhao, Yongjun, Morin, Ryan D., Jones, Steven J., Marra, Marco A.
Publicado 2019

Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing

por Haile, Simon, Corbett, Richard D., MacLeod, Tina, Bilobram, Steve, Smailus, Duane, Tsao, Philip, Kirk, Heather, McDonald, Helen, Pandoh, Pawan, Bala, Miruna, Hirst, Martin, Miller, Diane, Moore, Richard A., Mungall, Andrew J., Schein, Jacquie, Coope, Robin J., Ma, Yussanne, Zhao, Yongjun, Holt, Rob A., Jones, Steven J., Marra, Marco A.
Publicado 2017

Sources of erroneous sequences and artifact chimeric reads in next generation sequencing of genomic DNA from formalin-fixed paraffin-embedded samples

por Haile, Simon, Corbett, Richard D, Bilobram, Steve, Bye, Morgan H, Kirk, Heather, Pandoh, Pawan, Trinh, Eva, MacLeod, Tina, McDonald, Helen, Bala, Miruna, Miller, Diane, Novik, Karen, Coope, Robin J, Moore, Richard A, Zhao, Yongjun, Mungall, Andrew J, Ma, Yussanne, Holt, Rob A, Jones, Steven J, Marra, Marco A
Publicado 2019

Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis

por Haile, Simon, Pandoh, Pawan, McDonald, Helen, Corbett, Richard D., Tsao, Philip, Kirk, Heather, MacLeod, Tina, Jones, Martin, Bilobram, Steve, Brooks, Denise, Smailus, Duane, Steidl, Christian, Scott, David W., Bala, Miruna, Hirst, Martin, Miller, Diane, Moore, Richard A., Mungall, Andrew J., Coope, Robin J., Ma, Yussanne, Zhao, Yongjun, Holt, Rob A., Jones, Steven J., Marra, Marco A.
Publicado 2017

The Genome of the Northern Sea Otter (Enhydra lutris kenyoni)

por Jones, Samantha J., Haulena, Martin, Taylor, Gregory A., Chan, Simon, Bilobram, Steven, Warren, René L., Hammond, S. Austin, Mungall, Karen L., Choo, Caleb, Kirk, Heather, Pandoh, Pawan, Ally, Adrian, Dhalla, Noreen, Tam, Angela K. Y., Troussard, Armelle, Paulino, Daniel, Coope, Robin J. N., Mungall, Andrew J., Moore, Richard, Zhao, Yongjun, Birol, Inanc, Ma, Yussanne, Marra, Marco, Jones, Steven J. M.
Publicado 2017

A Scalable Strand-Specific Protocol Enabling Full-Length Total RNA Sequencing From Single Cells

por Haile, Simon, Corbett, Richard D., LeBlanc, Veronique G., Wei, Lisa, Pleasance, Stephen, Bilobram, Steve, Nip, Ka Ming, Brown, Kirstin, Trinh, Eva, Smith, Jillian, Trinh, Diane L., Bala, Miruna, Chuah, Eric, Coope, Robin J. N., Moore, Richard A., Mungall, Andrew J., Mungall, Karen L., Zhao, Yongjun, Hirst, Martin, Aparicio, Samuel, Birol, Inanc, Jones, Steven J. M., Marra, Marco A.
Publicado 2021

Optimization of magnetic bead-based nucleic acid extraction for SARS-CoV-2 testing using readily available reagents

por Haile, Simon, Nikiforuk, Aidan M., Pandoh, Pawan K., Twa, David D.W., Smailus, Duane E., Nguyen, Jason, Pleasance, Stephen, Wong, Angus, Zhao, Yongjun, Eisler, Diane, Moksa, Michelle, Cao, Qi, Wong, Marcus, Su, Edmund, Krzywinski, Martin, Nelson, Jessica, Mungall, Andrew J., Tsang, Frankie, Prentice, Leah M., Jassem, Agatha, Manges, Amee R., Jones, Steven J.M., Coope, Robin J., Prystajecky, Natalie, Marra, Marco A., Krajden, Mel, Hirst, Martin
Publicado 2022

The Genome of the Beluga Whale (Delphinapterus leucas)

por Jones, Steven J. M., Taylor, Gregory A., Chan, Simon, Warren, René L., Hammond, S. Austin, Bilobram, Steven, Mordecai, Gideon, Suttle, Curtis A., Miller, Kristina M., Schulze, Angela, Chan, Amy M., Jones, Samantha J., Tse, Kane, Li, Irene, Cheung, Dorothy, Mungall, Karen L., Choo, Caleb, Ally, Adrian, Dhalla, Noreen, Tam, Angela K. Y., Troussard, Armelle, Kirk, Heather, Pandoh, Pawan, Paulino, Daniel, Coope, Robin J. N., Mungall, Andrew J., Moore, Richard, Zhao, Yongjun, Birol, Inanc, Ma, Yussanne, Marra, Marco, Haulena, Martin
Publicado 2017

Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing

por Laks, Emma, McPherson, Andrew, Zahn, Hans, Lai, Daniel, Steif, Adi, Brimhall, Jazmine, Biele, Justina, Wang, Beixi, Masud, Tehmina, Ting, Jerome, Grewal, Diljot, Nielsen, Cydney, Leung, Samantha, Bojilova, Viktoria, Smith, Maia, Golovko, Oleg, Poon, Steven, Eirew, Peter, Kabeer, Farhia, Ruiz de Algara, Teresa, Lee, So Ra, Taghiyar, M. Jafar, Huebner, Curtis, Ngo, Jessica, Chan, Tim, Vatrt-Watts, Spencer, Walters, Pascale, Abrar, Nafis, Chan, Sophia, Wiens, Matt, Martin, Lauren, Scott, R. Wilder, Underhill, T. Michael, Chavez, Elizabeth, Steidl, Christian, Da Costa, Daniel, Ma, Yussanne, Coope, Robin J.N., Corbett, Richard, Pleasance, Stephen, Moore, Richard, Mungall, Andrew J., Mar, Colin, Cafferty, Fergus, Gelmon, Karen, Chia, Stephen, Marra, Marco A., Hansen, Carl, Shah, Sohrab P., Aparicio, Samuel
Publicado 2019