A network biology workflow to study transcriptomics data of the diabetic liver

por Kutmon, Martina, Evelo, Chris T, Coort, Susan L
Publicado 2014

CyTargetLinker: A Cytoscape App to Integrate Regulatory Interactions in Network Analysis

por Kutmon, Martina, Kelder, Thomas, Mandaviya, Pooja, Evelo, Chris T. A., Coort, Susan L.
Publicado 2013

Integrative network-based analysis of mRNA and microRNA expression in 1,25-dihydroxyvitamin D(3)-treated cancer cells

por Kutmon, Martina, Coort, Susan L., de Nooijer, Kim, Lemmens, Claire, Evelo, Chris T.
Publicado 2015

CyTargetLinker app update: A flexible solution for network extension in Cytoscape

por Kutmon, Martina, Ehrhart, Friederike, Willighagen, Egon L., Evelo, Chris T., Coort, Susan L.
Publicado 2019

New insights in Rett syndrome using pathway analysis for transcriptomics data

por Ehrhart, Friederike, Coort, Susan L. M., Cirillo, Elisa, Smeets, Eric, Evelo, Chris T., Curfs, Leopold
Publicado 2016

Transcriptomic changes in peripheral blood mononuclear cells with weight loss: systematic literature review and primary data synthesis

por Day, Kaitlin, Dordevic, Aimee L., Truby, Helen, Southey, Melissa C., Coort, Susan, Murgia, Chiara
Publicado 2021

Identification of Biological Pathways Contributing to Marbling in Skeletal Muscle to Improve Beef Cattle Breeding

por Roudbari, Zahra, Coort, Susan L., Kutmon, Martina, Eijssen, Lars, Melius, Jonathan, Sadkowski, Tomasz, Evelo, Chris T.
Publicado 2020

Rett syndrome – biological pathways leading from MECP2 to disorder phenotypes

por Ehrhart, Friederike, Coort, Susan L. M., Cirillo, Elisa, Smeets, Eric, Evelo, Chris T., Curfs, Leopold M. G.
Publicado 2016

Presenting and exploring biological pathways with PathVisio

por van Iersel, Martijn P, Kelder, Thomas, Pico, Alexander R, Hanspers, Kristina, Coort, Susan, Conklin, Bruce R, Evelo, Chris
Publicado 2008

Bioinformatics for the NuGO proof of principle study: analysis of gene expression in muscle of ApoE3*Leiden mice on a high-fat diet using PathVisio

por Coort, Susan L. M., van Iersel, Martijn P., van Erk, Marjan, Kooistra, Teake, Kleemann, Robert, Evelo, Chris T. A.
Publicado 2008

Reactome from a WikiPathways Perspective

por Bohler, Anwesha, Wu, Guanming, Kutmon, Martina, Pradhana, Leontius Adhika, Coort, Susan L., Hanspers, Kristina, Haw, Robin, Pico, Alexander R., Evelo, Chris T.
Publicado 2016

Biological Pathways Leading From ANGPTL8 to Diabetes Mellitus–A Co-expression Network Based Analysis

por Siddiqa, Amnah, Cirillo, Elisa, Tareen, Samar H. K., Ali, Amjad, Kutmon, Martina, Eijssen, Lars M. T., Ahmad, Jamil, Evelo, Chris T., Coort, Susan L.
Publicado 2018

From SNPs to pathways: Biological interpretation of type 2 diabetes (T2DM) genome wide association study (GWAS) results

por Cirillo, Elisa, Kutmon, Martina, Gonzalez Hernandez, Manuel, Hooimeijer, Tom, Adriaens, Michiel E., Eijssen, Lars M. T., Parnell, Laurence D., Coort, Susan L., Evelo, Chris T.
Publicado 2018

CD11c(−)MHC2(low) Macrophages Are a New Inflammatory and Dynamic Subset in Murine Adipose Tissue

por Wetzels, Suzan, Bijnen, Mitchell, Wijnands, Erwin, van de Gaar, José, Tan, Andika, Coort, Susan, Biessen, Erik A. L., Schalkwijk, Casper G., Wouters, Kristiaan
Publicado 2020

Adipocyte abundances of CES1, CRYAB, ENO1 and GANAB are modified in-vitro by glucose restriction and are associated with cellular remodelling during weight regain

por Qiao, Qi, Bouwman, Freek G., van Baak, Marleen A., Roumans, Nadia J. T., Vink, Roel G., Coort, Susan L. M., Renes, Johan W., Mariman, Edwin C. M.
Publicado 2019

Tolerogenic effects of 1,25-dihydroxyvitamin D on dendritic cells involve induction of fatty acid synthesis

por Garcia, Amadeo Muñoz, Bishop, Emma L., Li, Danyang, Jeffery, Louisa E., Garten, Antje, Thakker, Alpesh, Certo, Michelangelo, Mauro, Claudio, Tennant, Daniel A., Dimeloe, Sarah, Evelo, Chris T., Coort, Susan L., Hewison, Martin
Publicado 2021

WikiPathways: capturing the full diversity of pathway knowledge

por Kutmon, Martina, Riutta, Anders, Nunes, Nuno, Hanspers, Kristina, Willighagen, Egon L., Bohler, Anwesha, Mélius, Jonathan, Waagmeester, Andra, Sinha, Sravanthi R., Miller, Ryan, Coort, Susan L., Cirillo, Elisa, Smeets, Bart, Evelo, Chris T., Pico, Alexander R.
Publicado 2016

2D-electrophoresis and multiplex immunoassay proteomic analysis of different body fluids and cellular components reveal known and novel markers for extended fasting

por Bouwman, Freek G, de Roos, Baukje, Rubio-Aliaga, Isabel, Crosley, L Katie, Duthie, Susan J, Mayer, Claus, Horgan, Graham, Polley, Abigael C, Heim, Carolin, Coort, Susan LM, Evelo, Chris T, Mulholland, Francis, Johnson, Ian T, Elliott, Ruan M, Daniel, Hannelore, Mariman, Edwin CM
Publicado 2011

Ten simple rules for creating reusable pathway models for computational analysis and visualization

por Hanspers, Kristina, Kutmon, Martina, Coort, Susan L., Digles, Daniela, Dupuis, Lauren J., Ehrhart, Friederike, Hu, Finterly, Lopes, Elisson N., Martens, Marvin, Pham, Nhung, Shin, Woosub, Slenter, Denise N., Waagmeester, Andra, Willighagen, Egon L., Winckers, Laurent A., Evelo, Chris T., Pico, Alexander R.
Publicado 2021

WikiPathways: connecting communities

por Martens, Marvin, Ammar, Ammar, Riutta, Anders, Waagmeester, Andra, Slenter, Denise N, Hanspers, Kristina, A. Miller, Ryan, Digles, Daniela, Lopes, Elisson N, Ehrhart, Friederike, Dupuis, Lauren J, Winckers, Laurent A, Coort, Susan L, Willighagen, Egon L, Evelo, Chris T, Pico, Alexander R, Kutmon, Martina
Publicado 2020