Deep learning approaches for noncoding variant prioritization in neurodegenerative diseases

por Lan, Alexander Y., Corces, M. Ryan
Publicado 2022

Preleukemic Hematopoietic Stem Cells in Human Acute Myeloid Leukemia

por Corces, M. Ryan, Chang, Howard Y., Majeti, Ravindra
Publicado 2017

Single-cell lineage tracing by endogenous mutations enriched in transposase accessible mitochondrial DNA

por Xu, Jin, Nuno, Kevin, Litzenburger, Ulrike M, Qi, Yanyan, Corces, M Ryan, Majeti, Ravindra, Chang, Howard Y
Publicado 2019

PEPATAC: an optimized pipeline for ATAC-seq data analysis with serial alignments

por Smith, Jason P, Corces, M Ryan, Xu, Jin, Reuter, Vincent P, Chang, Howard Y, Sheffield, Nathan C
Publicado 2021

ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis

por Granja, Jeffrey M., Corces, M. Ryan, Pierce, Sarah E., Bagdatli, S. Tansu, Choudhry, Hani, Chang, Howard Y., Greenleaf, William J.
Publicado 2021

Author Correction: ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis

por Granja, Jeffrey M., Corces, M. Ryan, Pierce, Sarah E., Bagdatli, S. Tansu, Choudhry, Hani, Chang, Howard Y., Greenleaf, William J.
Publicado 2021

A Humanized Ossicle-niche Xenotransplantation Model Enables Improved Human Leukemic Engraftment

por Reinisch, Andreas, Thomas, Daniel, Corces, M. Ryan, Zhang, Xiaohua, Gratzinger, Dita, Hong, Wan-Jen, Schallmoser, Katharina, Strunk, Dirk, Majeti, Ravindra
Publicado 2016

Polycomb-mediated genome architecture enables long-range spreading of H3K27 methylation

por Kraft, Katerina, Yost, Kathryn E., Murphy, Sedona E., Magg, Andreas, Long, Yicheng, Corces, M. Ryan, Granja, Jeffrey M., Wittler, Lars, Mundlos, Stefan, Cech, Thomas R., Boettiger, Alistair N., Chang, Howard Y.
Publicado 2022

Lineage-specific and single cell chromatin accessibility charts human hematopoiesis and leukemia evolution

por Corces, M. Ryan, Buenrostro, Jason D., Wu, Beijing, Greenside, Peyton G., Chan, Steven M., Koenig, Julie L., Snyder, Michael P., Pritchard, Jonathan K., Kundaje, Anshul, Greenleaf, William J., Majeti, Ravindra, Chang, Howard Y.
Publicado 2016

Epigenomic priming of immune genes implicates oligodendroglia in multiple sclerosis susceptibility

por Meijer, Mandy, Agirre, Eneritz, Kabbe, Mukund, van Tuijn, Cassandra A., Heskol, Abeer, Zheng, Chao, Falcão, Ana Mendanha, Bartosovic, Marek, Kirby, Leslie, Calini, Daniela, Johnson, Michael R., Corces, M. Ryan, Montine, Thomas J., Chen, Xingqi, Chang, Howard Y., Malhotra, Dheeraj, Castelo-Branco, Gonçalo
Publicado 2022

Whole genome deconvolution unveils Alzheimer’s resilient epigenetic signature

por Berson, Eloise, Sreenivas, Anjali, Phongpreecha, Thanaphong, Perna, Amalia, Grandi, Fiorella C., Xue, Lei, Ravindra, Neal G., Payrovnaziri, Neelufar, Mataraso, Samson, Kim, Yeasul, Espinosa, Camilo, Chang, Alan L., Becker, Martin, Montine, Kathleen S., Fox, Edward J., Chang, Howard Y., Corces, M. Ryan, Aghaeepour, Nima, Montine, Thomas J.
Publicado 2023

Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases

por Corces, M. Ryan, Shcherbina, Anna, Kundu, Soumya, Gloudemans, Michael J., Frésard, Laure, Granja, Jeffrey M., Louie, Bryan H., Eulalio, Tiffany, Shams, Shadi, Bagdatli, S. Tansu, Mumbach, Maxwell R., Liu, Boxiang, Montine, Kathleen S., Greenleaf, William J., Kundaje, Anshul, Montgomery, Stephen B., Chang, Howard Y., Montine, Thomas J.
Publicado 2020

Single-cell spatial proteomic imaging for human neuropathology

por Vijayaragavan, Kausalia, Cannon, Bryan J., Tebaykin, Dmitry, Bossé, Marc, Baranski, Alex, Oliveria, J. P., Bukhari, Syed A., Mrdjen, Dunja, Corces, M. Ryan, McCaffrey, Erin F., Greenwald, Noah F., Sigal, Yari, Marquez, Diana, Khair, Zumana, Bruce, Trevor, Goldston, Mako, Bharadwaj, Anusha, Montine, Kathleen S., Angelo, R. Michael, Montine, Thomas J., Bendall, Sean C.
Publicado 2022

Transcript-indexed ATAC-seq for precision immune profiling

por Satpathy, Ansuman T., Saligrama, Naresha, Buenrostro, Jason D., Wei, Yuning, Wu, Beijing, Rubin, Adam J., Granja, Jeffrey M., Lareau, Caleb A., Li, Rui, Qi, Yanyan, Parker, Kevin R., Mumbach, Maxwell R., Serratelli, William S., Gennert, David G., Schep, Alicia N., Corces, M. Ryan, Khodadoust, Michael S., Kim, Youn H., Khavari, Paul A., Greenleaf, William J., Davis, Mark M., Chang, Howard Y.
Publicado 2018