Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks

por Haibe-Kains, Benjamin, Olsen, Catharina, Djebbari, Amira, Bontempi, Gianluca, Correll, Mick, Bouton, Christopher, Quackenbush, John
Publicado 2012

Brain and Testicular Tumors in Mice with Progenitor Cells Lacking BAX and BAK

por Katz, Samuel G., Fisher, Jill K., Correll, Mick, Bronson, Roderick T., Ligon, Keith L., Walensky, Loren D.
Publicado 2012

CRX Is a Diagnostic Marker of Retinal and Pineal Lineage Tumors

por Santagata, Sandro, Maire, Cecile L., Idbaih, Ahmed, Geffers, Lars, Correll, Mick, Holton, Kristina, Quackenbush, John, Ligon, Keith L.
Publicado 2009

GeneSigDB—a curated database of gene expression signatures

por Culhane, Aedín C., Schwarzl, Thomas, Sultana, Razvan, Picard, Kermshlise C., Picard, Shaita C., Lu, Tim H., Franklin, Katherine R., French, Simon J., Papenhausen, Gerald, Correll, Mick, Quackenbush, John
Publicado 2010

A microRNA activity map of human mesenchymal tumors: connections to oncogenic pathways; an integrative transcriptomic study

por Fountzilas, Elena, Kelly, Andrew D, Perez-Atayde, Antonio R, Goldsmith, Jeffrey, Konstantinopoulos, Panagiotis A, Francoeur, Nancy, Correll, Mick, Rubio, Renee, Hu, Lan, Gebhardt, Mark C, Quackenbush, John, Spentzos, Dimitrios
Publicado 2012

Live Attenuated Rev-Independent Nef¯SIV Enhances Acquisition of Heterologous SIVsmE660 in Acutely Vaccinated Rhesus Macaques

por Byrareddy, Siddappa N., Ayash-Rashkovsky, Mila, Kramer, Victor G., Lee, Sandra J., Correll, Mick, Novembre, Francis J., Villinger, Francois, Johnson, Welkin E., von Gegerfelt, Agneta, Felber, Barbara K., Ruprecht, Ruth M.
Publicado 2013

Comprehensive genomic profiling of the lung transcriptome in emphysema and idiopathic pulmonary fibrosis using RNA-Seq

por Kusko, Rebecca L, Brothers, John, Liu, Gang, Luo, Lingqi, Guardela, Brenda Juan, Tedrow, John, Aleksyev, Yuriy, Yang, Ivana V, Correll, Mick, Geraci, Mark, Quackenbush, John, Sciurba, Frank, Lenburg, Marc, Schwartz, David A, Beane, Jennifer, Kaminski, Naftali, Spira, Avrum
Publicado 2012

Moving beyond gene expression: identification of lung-disease-associated novel transcripts and alternative splicing by RNA sequencing

por Brothers, John, Kusko, Rebecca, Liu, Gang, Luo, Lingqi, Guardela, Brenda Juan, Tedrow, John, Alekesyev, Yuriy, Yang, Ivana V, Correll, Mick, Geraci, Mark, Quackenbush, John, Sciurba, Frank, Sebastiani, Paola, Lenburg, Marc, Kaminski, Naftali, Schwartz, David A, Spira, Avrum, Beane, Jennifer
Publicado 2012

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures

por Culhane, Aedín C., Schröder, Markus S., Sultana, Razvan, Picard, Shaita C., Martinelli, Enzo N., Kelly, Caroline, Haibe-Kains, Benjamin, Kapushesky, Misha, St Pierre, Anne-Alyssa, Flahive, William, Picard, Kermshlise C., Gusenleitner, Daniel, Papenhausen, Gerald, O'Connor, Niall, Correll, Mick, Quackenbush, John
Publicado 2012

Characterizing the small RNA transcriptome associated with COPD and ILD using next-generation sequencing

por Campbell, Joshua D, Luo, Lingqi, Liu, Gang, Xiao, Ji, Gerrein, Joseph, Guardela, Brenda J, Tedrow, John, Aleksyev, Yuriy O, Yang, Ivana V, Correll, Mick, Geraci, Mark, Quackenbush, John, Sciurba, Frank, Schwartz, David A, Kaminski, Naftali, Lenburg, Marc E, Beane, Jennifer, Spira, Avrum
Publicado 2012

The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons

por Ho Sui, Shannan J., Begley, Kimberly, Reilly, Dorothy, Chapman, Brad, McGovern, Ray, Rocca-Sera, Philippe, Maguire, Eamonn, Altschuler, Gabriel M., Hansen, Terah A. A., Sompallae, Ramakrishna, Krivtsov, Andrei, Shivdasani, Ramesh A., Armstrong, Scott A., Culhane, Aedín C., Correll, Mick, Sansone, Susanna-Assunta, Hofmann, Oliver, Hide, Winston
Publicado 2012

Assessment of microRNA differential expression and detection in multiplexed small RNA sequencing data

por Campbell, Joshua D., Liu, Gang, Luo, Lingqi, Xiao, Ji, Gerrein, Joseph, Juan-Guardela, Brenda, Tedrow, John, Alekseyev, Yuriy O., Yang, Ivana V., Correll, Mick, Geraci, Mark, Quackenbush, John, Sciurba, Frank, Schwartz, David A., Kaminski, Naftali, Johnson, W. Evan, Monti, Stefano, Spira, Avrum, Beane, Jennifer, Lenburg, Marc E.
Publicado 2015

Interpreting cancer genomes using systematic host perturbations by tumour virus proteins

por Rozenblatt-Rosen, Orit, Deo, Rahul C., Padi, Megha, Adelmant, Guillaume, Calderwood, Michael A., Rolland, Thomas, Grace, Miranda, Dricot, Amélie, Askenazi, Manor, Tavares, Maria, Pevzner, Sam, Abderazzaq, Fieda, Byrdsong, Danielle, Carvunis, Anne-Ruxandra, Chen, Alyce A., Cheng, Jingwei, Correll, Mick, Duarte, Melissa, Fan, Changyu, Feltkamp, Mariet C., Ficarro, Scott B., Franchi, Rachel, Garg, Brijesh K., Gulbahce, Natali, Hao, Tong, Holthaus, Amy M., James, Robert, Korkhin, Anna, Litovchick, Larisa, Mar, Jessica C., Pak, Theodore R., Rabello, Sabrina, Rubio, Renee, Shen, Yun, Singh, Saurav, Spangle, Jennifer M., Tasan, Murat, Wanamaker, Shelly, Webber, James T., Roecklein-Canfield, Jennifer, Johannsen, Eric, Barabási, Albert-László, Beroukhim, Rameen, Kieff, Elliott, Cusick, Michael E., Hill, David E., Münger, Karl, Marto, Jarrod A., Quackenbush, John, Roth, Frederick P., DeCaprio, James A., Vidal, Marc
Publicado 2012