satmut_utils: a simulation and variant calling package for multiplexed assays of variant effect

por Hoskins, Ian, Sun, Song, Cote, Atina, Roth, Frederick P., Cenik, Can
Publicado 2023

Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays

por Lam, Kathy N., van Bakel, Harm, Cote, Atina G., van der Ven, Anton, Hughes, Timothy R.
Publicado 2011

A web application and service for imputing and visualizing missense variant effect maps

por Wu, Yingzhou, Weile, Jochen, Cote, Atina G, Sun, Song, Knapp, Jennifer, Verby, Marta, Roth, Frederick P
Publicado 2019

Pacybara: Accurate long-read sequencing for barcoded mutagenized allelic libraries

por Weile, Jochen, Cote, Atina G., Kishore, Nishka, Tabet, Daniel, van Loggerenberg, Warren, Rayhan, Ashyad, Roth, Frederick P
Publicado 2023

The draft genome and transcriptome of Cannabis sativa

por van Bakel, Harm, Stout, Jake M, Cote, Atina G, Tallon, Carling M, Sharpe, Andrew G, Hughes, Timothy R, Page, Jonathan E
Publicado 2011

A proactive genotype-to-patient-phenotype map for cystathionine beta-synthase

por Sun, Song, Weile, Jochen, Verby, Marta, Wu, Yingzhou, Wang, Yang, Cote, Atina G., Fotiadou, Iosifina, Kitaygorodsky, Julia, Vidal, Marc, Rine, Jasper, Ješina, Pavel, Kožich, Viktor, Roth, Frederick P.
Publicado 2020

A comprehensive map of human glucokinase variant activity

por Gersing, Sarah, Cagiada, Matteo, Gebbia, Marinella, Gjesing, Anette P., Coté, Atina G., Seesankar, Gireesh, Li, Roujia, Tabet, Daniel, Weile, Jochen, Stein, Amelie, Gloyn, Anna L., Hansen, Torben, Roth, Frederick P., Lindorff-Larsen, Kresten, Hartmann-Petersen, Rasmus
Publicado 2023

Highly Combinatorial Genetic Interaction Analysis Reveals a Multi-Drug Transporter Influence Network

por Celaj, Albi, Gebbia, Marinella, Musa, Louai, Cote, Atina G., Snider, Jamie, Wong, Victoria, Ko, Minjeong, Fong, Tiffany, Bansal, Paul, Mellor, Joseph C., Seesankar, Gireesh, Nguyen, Maria, Zhou, Shijie, Wang, Liangxi, Kishore, Nishka, Stagljar, Igor, Suzuki, Yo, Yachie, Nozomu, Roth, Frederick P.
Publicado 2019

A framework for exhaustively mapping functional missense variants

por Weile, Jochen, Sun, Song, Cote, Atina G, Knapp, Jennifer, Verby, Marta, Mellor, Joseph C, Wu, Yingzhou, Pons, Carles, Wong, Cassandra, van Lieshout, Natascha, Yang, Fan, Tasan, Murat, Tan, Guihong, Yang, Shan, Fowler, Douglas M, Nussbaum, Robert, Bloom, Jesse D, Vidal, Marc, Hill, David E, Aloy, Patrick, Roth, Frederick P
Publicado 2017

Mapping DNA damage‐dependent genetic interactions in yeast via party mating and barcode fusion genetics

por Díaz‐Mejía, J Javier, Celaj, Albi, Mellor, Joseph C, Coté, Atina, Balint, Attila, Ho, Brandon, Bansal, Pritpal, Shaeri, Fatemeh, Gebbia, Marinella, Weile, Jochen, Verby, Marta, Karkhanina, Anna, Zhang, YiFan, Wong, Cassandra, Rich, Justin, Prendergast, D'Arcy, Gupta, Gaurav, Öztürk, Sedide, Durocher, Daniel, Brown, Grant W, Roth, Frederick P
Publicado 2018

Pooled‐matrix protein interaction screens using Barcode Fusion Genetics

por Yachie, Nozomu, Petsalaki, Evangelia, Mellor, Joseph C, Weile, Jochen, Jacob, Yves, Verby, Marta, Ozturk, Sedide B, Li, Siyang, Cote, Atina G, Mosca, Roberto, Knapp, Jennifer J, Ko, Minjeong, Yu, Analyn, Gebbia, Marinella, Sahni, Nidhi, Yi, Song, Tyagi, Tanya, Sheykhkarimli, Dayag, Roth, Jonathan F, Wong, Cassandra, Musa, Louai, Snider, Jamie, Liu, Yi‐Chun, Yu, Haiyuan, Braun, Pascal, Stagljar, Igor, Hao, Tong, Calderwood, Michael A, Pelletier, Laurence, Aloy, Patrick, Hill, David E, Vidal, Marc, Roth, Frederick P
Publicado 2016

Next-generation large-scale binary protein interaction network for Drosophila melanogaster

por Tang, Hong-Wen, Spirohn, Kerstin, Hu, Yanhui, Hao, Tong, Kovács, István A., Gao, Yue, Binari, Richard, Yang-Zhou, Donghui, Wan, Kenneth H., Bader, Joel S., Balcha, Dawit, Bian, Wenting, Booth, Benjamin W., Coté, Atina G., de Rouck, Steffi, Desbuleux, Alice, Goh, Kah Yong, Kim, Dae-Kyum, Knapp, Jennifer J., Lee, Wen Xing, Lemmens, Irma, Li, Cathleen, Li, Mian, Li, Roujia, Lim, Hyobin Julianne, Liu, Yifang, Luck, Katja, Markey, Dylan, Pollis, Carl, Rangarajan, Sudharshan, Rodiger, Jonathan, Schlabach, Sadie, Shen, Yun, Sheykhkarimli, Dayag, TeeKing, Bridget, Roth, Frederick P., Tavernier, Jan, Calderwood, Michael A., Hill, David E., Celniker, Susan E., Vidal, Marc, Perrimon, Norbert, Mohr, Stephanie E.
Publicado 2023

A proteome-scale map of the SARS-CoV-2–human contactome

por Kim, Dae-Kyum, Weller, Benjamin, Lin, Chung-Wen, Sheykhkarimli, Dayag, Knapp, Jennifer J., Dugied, Guillaume, Zanzoni, Andreas, Pons, Carles, Tofaute, Marie J., Maseko, Sibusiso B., Spirohn, Kerstin, Laval, Florent, Lambourne, Luke, Kishore, Nishka, Rayhan, Ashyad, Sauer, Mayra, Young, Veronika, Halder, Hridi, la Rosa, Nora Marín-de, Pogoutse, Oxana, Strobel, Alexandra, Schwehn, Patrick, Li, Roujia, Rothballer, Simin T., Altmann, Melina, Cassonnet, Patricia, Coté, Atina G., Vergara, Lena Elorduy, Hazelwood, Isaiah, Liu, Betty B., Nguyen, Maria, Pandiarajan, Ramakrishnan, Dohai, Bushra, Coloma, Patricia A. Rodriguez, Poirson, Juline, Giuliana, Paolo, Willems, Luc, Taipale, Mikko, Jacob, Yves, Hao, Tong, Hill, David E., Brun, Christine, Twizere, Jean-Claude, Krappmann, Daniel, Heinig, Matthias, Falter, Claudia, Aloy, Patrick, Demeret, Caroline, Vidal, Marc, Calderwood, Michael A., Roth, Frederick P., Falter-Braun, Pascal
Publicado 2022

A reference map of the human binary protein interactome

por Luck, Katja, Kim, Dae-Kyum, Lambourne, Luke, Spirohn, Kerstin, Begg, Bridget E., Bian, Wenting, Brignall, Ruth, Cafarelli, Tiziana, Campos-Laborie, Francisco J., Charloteaux, Benoit, Choi, Dongsic, Coté, Atina G., Daley, Meaghan, Deimling, Steven, Desbuleux, Alice, Dricot, Amélie, Gebbia, Marinella, Hardy, Madeleine F., Kishore, Nishka, Knapp, Jennifer J., Kovács, István A., Lemmens, Irma, Mee, Miles W., Mellor, Joseph C., Pollis, Carl, Pons, Carles, Richardson, Aaron D., Schlabach, Sadie, Teeking, Bridget, Yadav, Anupama, Babor, Mariana, Balcha, Dawit, Basha, Omer, Bowman-Colin, Christian, Chin, Suet-Feung, Choi, Soon Gang, Colabella, Claudia, Coppin, Georges, D’Amata, Cassandra, Ridder, David De, Rouck, Steffi De, Duran-Frigola, Miquel, Ennajdaoui, Hanane, Goebels, Florian, Goehring, Liana, Gopal, Anjali, Haddad, Ghazal, Hatchi, Elodie, Helmy, Mohamed, Jacob, Yves, Kassa, Yoseph, Landini, Serena, Li, Roujia, van Lieshout, Natascha, MacWilliams, Andrew, Markey, Dylan, Paulson, Joseph N., Rangarajan, Sudharshan, Rasla, John, Rayhan, Ashyad, Rolland, Thomas, San-Miguel, Adriana, Shen, Yun, Sheykhkarimli, Dayag, Sheynkman, Gloria M., Simonovsky, Eyal, Taşan, Murat, Tejeda, Alexander, Tropepe, Vincent, Twizere, Jean-Claude, Wang, Yang, Weatheritt, Robert J., Weile, Jochen, Xia, Yu, Yang, Xinping, Yeger-Lotem, Esti, Zhong, Quan, Aloy, Patrick, Bader, Gary D., Rivas, Javier De Las, Gaudet, Suzanne, Hao, Tong, Rak, Janusz, Tavernier, Jan, Hill, David E., Vidal, Marc, Roth, Frederick P., Calderwood, Michael A.
Publicado 2020